Coarse-graining of large single-cell RNA-seq data into metacells

Repository for the R package EPIC, to Estimate the Proportion of Immune and Cancer cells from bulk gene expression data.

Tools to process and analyze deep sequencing data.

a laboratory website written in c#

All-in-one analysis pipeline

RNA-seq aligner

Application for making ENCODE Blacklists

cytofkit: an integrated flow/mass cytometry data analysis pipeline

Play with neural networks!

A mixture of mixed generalized linear models for analyzing flow cytometry cell-count data.

🎓 A collection of interactive courses for the swirl R package.

Computer implementation as described in "The Elements of Computing Systems"