added closing for arg layout reading

skfile · Sep 12, 2013 · ee6e348 · ee6e348
1 parent 88750fc
commit ee6e348
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Showing 2 changed files with 4 additions and 3 deletions.
diff --git a/argweaver/vis.py b/argweaver/vis.py
@@ -1,4 +1,5 @@
 
+from contextlib import closing
 import os
 import subprocess
 
@@ -135,7 +136,7 @@ def iter_arg_layout(filename):
     """
     Iterate through an ARG layout file.
     """
-    with argweaver.open_stream(filename, compress='bgzip') as infile:
+    with closing(argweaver.open_stream(filename, compress='bgzip')) as infile:
         for line in infile:
             tokens = line.rstrip().split("\t")
             block = [tokens[0], int(tokens[1]), int(tokens[2])]

diff --git a/bin/arg-serve b/bin/arg-serve
@@ -209,6 +209,6 @@ util.toc()
 
 
 if conf.pub:
-    run(host='', port=8080)
+    run(host='', port=conf.port)
 else:
-    run(host='localhost', port=8080)
+    run(host='localhost', port=conf.port)