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DeepLabV3Plus-Pytorch-WSI Public
Forked from VainF/DeepLabV3Plus-PytorchDeepLabv3 and DeepLabv3+ with pretrained weights for Pascal VOC & Cityscapes (Modified for Whole Slide Images)
Python MIT License UpdatedOct 7, 2024 -
ome-zarr-py Public
Forked from ome/ome-zarr-pyImplementation of next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.
Python Other UpdatedAug 26, 2024 -
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CLAM Public
Forked from mahmoodlab/CLAMData-efficient and weakly supervised computational pathology on whole slide images - Nature Biomedical Engineering
Python GNU General Public License v3.0 UpdatedFeb 1, 2024 -
qupath Public
Forked from qupath/qupathQuPath - Bioimage analysis & digital pathology
Java GNU General Public License v3.0 UpdatedJul 15, 2023 -
valis Public
Forked from MathOnco/valisVirtual Alignment of pathoLogy Image Series
Python MIT License UpdatedMay 27, 2023 -
seg-gini Public
Forked from histocartography/seg-giniSEGmentation using Graphs with Inexact aNd Incomplete labels
Python MIT License UpdatedMar 3, 2023 -
histocartography Public
Forked from BiomedSciAI/histocartographyA standardized Python API with necessary preprocessing, machine learning and explainability tools to facilitate graph-analytics in computational pathology.
Python GNU Affero General Public License v3.0 UpdatedMar 1, 2023 -
Mixed_supervision Public
Forked from bianhao123/Mixed_supervisionMICCAI2022: Multiple Instance Learning with Mixed Supervision in Gleason Grading.
Python GNU General Public License v3.0 UpdatedFeb 19, 2023 -
mmselfsup Public
Forked from open-mmlab/mmselfsupOpenMMLab Self-Supervised Learning Toolbox and Benchmark
Python Apache License 2.0 UpdatedDec 8, 2022 -
ReMix Public
Forked from 1st-Yasuo/ReMix[MICCAI2022] This repository holds the Pytorch implementation for the ReMix augmentation described in the paper "ReMix: A General and Efficient Framework for Multiple Instance Learning based Whole …
Python UpdatedOct 23, 2022 -
ConCL Public
[ECCV2022] ConCL: Concept Contrastive Learning for Dense Prediction Pre-training in Pathology Image
Python Apache License 2.0 UpdatedOct 3, 2022 -
pdffigures2 Public
Forked from allenai/pdffigures2Given a scholarly PDF, extract figures, tables, captions, and section titles.
Scala Apache License 2.0 UpdatedAug 16, 2022 -
CasMonitorQt5 Public
PySide2 touchscreen-based GUI and python functions for sample processing and fluid control system for biomedical research
QML UpdatedAug 9, 2022 -
Peter Haub QuPath script debugger extension compatible with IntelliJ
Java UpdatedAug 8, 2022 -
IHC-virtual-stain-AttnGAN Public
Forked from baibijie/HER2-virtual-stainingPython UpdatedJul 18, 2022 -
Gastric-CPS-PDL1-ONEST Public
Multi-institutional inter-rater reliability study of 14 pathologists scoring PDL1 IHC by CPS in 108 cases of gastric cancer
R UpdatedJun 28, 2022 -
Multi-institutional evaluation and inter-rater reliability of pathologist scoring HER2 immunohistochemistry
R UpdatedJun 1, 2022 -
ONEST_modified Public
Observers Needed to Evaluate Subjective Tests in R with extra functions to help save data and customize plots
R UpdatedFeb 3, 2022 -
semanticGAN_WSI Public
Forked from nv-tlabs/semanticGAN_codeOfficial repo for SemanticGAN https://nv-tlabs.github.io/semanticGAN/
Python Other UpdatedJan 27, 2022 -
NV_stylegan2-ada-pytorch-WSI Public
Forked from NVlabs/stylegan2-ada-pytorchStyleGAN2-ADA - Official PyTorch implementation
Python Other UpdatedJan 13, 2022 -
stylegan2-pytorch-WSI Public
Forked from rosinality/stylegan2-pytorchImplementation of Analyzing and Improving the Image Quality of StyleGAN (StyleGAN 2) in PyTorch
Python MIT License UpdatedJan 4, 2022 -
TransMIL Public
Forked from szc19990412/TransMILTransMIL: Transformer based Correlated Multiple Instance Learning for Whole Slide Image Classification
Python UpdatedOct 16, 2021 -
stainTransfer_CycleGAN_pytorch Public
Forked from m4ln/stainTransfer_CycleGAN_pytorchImage-to-Image Translation in PyTorch
Python Other UpdatedSep 29, 2021 -
Semantic-Segmentation-Suite Public
Forked from GeorgeSeif/Semantic-Segmentation-SuiteSemantic Segmentation Suite in TensorFlow. Implement, train, and test new Semantic Segmentation models easily!
Python UpdatedApr 22, 2021