Skip to content

Issues: sokrypton/ColabDesign

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Clear current search query, filters, and sorts
48 Open 28 Closed
48 Open 28 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

Does is matter? ---- RSO notebook ERROR: 'i_pae' not found in ['seq_ent', 'plddt', 'pae', 'exp_res', 'helix']
#186 by Samuel-gwb was closed Dec 4, 2024
2
The Fold Conditioning notebook seems to be broken
#177 by ajasja was closed Nov 6, 2024
6
I can't see prediction of cyclic peptide example
#176 by kimdn was closed Oct 22, 2024
6
binders designed don't binds at the hotspots of the target chain.
#172 by rocke2020 was closed Aug 8, 2024
af_model.predict failing
#170 by baptiste-roelens was closed Feb 7, 2024
2
mk_af_model: refolding a sequence of a experimental structure using said structure as a template performs miserably
#167 by dandaman was closed Jan 31, 2024
2
XlaRuntimeError: FAILED_PRECONDITION: DNN library initialization failed.
#164 by johnnytam100 was closed Dec 8, 2023
1
WARNING: 'model_1_ptm' not found
#128 by DomML was closed Apr 25, 2023
1
Problem in designability_test.py
#126 by suknamgoong1970 was closed Apr 23, 2023
2
The sequence in design.fasta is different from the sequence in best.pdb
#124 by Lyang556 was closed May 11, 2023
5
why colabdesign alphafold limits on insertion code at chain
#113 by rocke2020 was closed Dec 22, 2023
difference between plddt in the log and in the saved PDB!
#102 by shahmandi was closed Nov 22, 2022
2
'mk_af_model' object has no attribute 'aux'
#97 by 17dacheng was closed Nov 23, 2022
6
Homooligomer design in ProteinMPNN
#96 by alessandronascimento was closed Nov 1, 2022
2
How to design more binders
#95 by Lyang556 was closed May 11, 2023
2
Sidechain rmsd loss throws out error
#87 by ardagoreci was closed Oct 16, 2022
2
Add seed
#86 by phiweger was closed Oct 13, 2022
2
Binder Hallucination Memory Leak
#73 by RaymondRuff was closed Sep 15, 2022
4
TypeError: tree_map() missing 1 required positional argument: 'tree'
#70 by ghost was closed Sep 26, 2022
16
WARNING:absl:No GPU/TPU found, falling back to CPU.
#66 by mouung was closed Aug 18, 2022
3
GPU Not Utilized
#53 by RaymondRuff was closed Aug 1, 2022
2
File Traceback Error AlphaFold Design
#52 by coopersvajda was closed Jul 27, 2022
3
A way to fix residue identities for a list of residues in partial hallucination.
#41 by Mingchenchen was closed Jul 6, 2022
binder redesign
#13 by avilella was closed Nov 23, 2022
1
losses went into inf/nan if optimizer is not SGD
#6 by Peldom was closed Nov 23, 2022
5
ProTip! Mix and match filters to narrow down what you’re looking for.