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  • Predictive NeuroImaging Lab, Institute of Artificial Intelligence in Medicine, Department of Diagnostic and Interventional Radiology and Neuroradiology,, University Hospital Essen
  • Essen, Germany
  • X @spisaktamas

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Python script for "Quadric Edge Collapse Decimation"

Python 47 7 Updated May 14, 2024

Lab website

1 2 Updated Oct 22, 2024

Connectome-based Hopfiled Neural Networks (fcHNN)

Jupyter Notebook 6 3 Updated Apr 4, 2024

A new markup-based typesetting system that is powerful and easy to learn.

Rust 37,407 1,013 Updated Feb 12, 2025

A drop-in replacement for Scikit-Learn’s GridSearchCV / RandomizedSearchCV -- but with cutting edge hyperparameter tuning techniques.

Python 468 51 Updated Nov 6, 2023

Sources for the DataLad handbook

Python 151 55 Updated Feb 4, 2025

fMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse fMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.

HTML 649 297 Updated Feb 12, 2025

Pypelines Utilizing a Modular Inventory

Python 4 1 Updated Sep 12, 2022

Minimal scripts available for predictions on multiple datasets

Python 1 Updated Jun 24, 2019

The Resting-state Pain susceptibility Network signature.

Jupyter Notebook 15 8 Updated May 6, 2022

pTFCE SPM Toolbox

MATLAB 12 4 Updated Jan 2, 2020

Modeling and statistical inference on fMRI data in Python

Python 96 55 Updated Apr 2, 2020

Conda environment for neuroimaging analysis in python, R, etc

Dockerfile 23 5 Updated May 20, 2021

c++ implementation of the pTFCE method (https://spisakt.github.io/pTFCE/)

C++ 2 Updated Jan 9, 2024

rsHRF: A Toolbox for Resting State HRF Deconvolution and Connectivity Analysis (MATLAB)

MATLAB 49 15 Updated Jun 25, 2024

A Reproducible Workflow for Structural and Functional Connectome Ensemble Learning

Python 123 41 Updated Feb 1, 2024

Automated Quality Control and visual reports for Quality Assessment of structural (T1w, T2w) and functional MRI of the brain

Python 310 132 Updated Feb 4, 2025

R interface to the ANTs biomedical image processing library

R 131 35 Updated Feb 11, 2025

MultiVariate Pattern Analysis in Python

Python 316 136 Updated Dec 5, 2023

Cortical neuroimaging visualization in Python

Python 244 100 Updated Dec 15, 2023

Neuroimaging analysis and visualization suite

C++ 638 254 Updated Feb 13, 2025

Machine learning for NeuroImaging in Python

Python 1,239 617 Updated Feb 13, 2025

Probabilistic Threshold-Free Cluster Enhancement of Neuroimages

R 38 6 Updated Aug 11, 2023

Analyses for "The effect of experimental placebo interventions on cerebral pain signature activity – a meta-analysis" by the placebo imaging collaboration. Requires MATLAB (2016b+SPM12+CANlab toolb…

MATLAB 6 4 Updated Sep 28, 2020

Visual programming for neuroimaging analysis

C++ 64 18 Updated Dec 6, 2019

Extension interfaces and modular workflow system for using nipype for small-animal MR imaging

Python 3 1 Updated Apr 15, 2019