A complete guide for analyzing bulk RNA-seq data. Go from raw FASTQ files to mapping reads using STAR and differential gene expression analysis using DESeq2, using example data from Guo et al. 2019.

A tool for diagnosing SMA using exome, genome or targeted sequencing data

The dysbiosisR package implements tools for calculating some common microbiome dysbiosis measures

WDL Analysis Research Pipelines

Create Standalone Installable Shiny Apps

A complete guide for analyzing bulk RNA-seq data. Go from raw FASTQ files to mapping reads using STAR and differential gene expression analysis using DESeq2, using example data from Guo et al. 2019.

Reproducible Analyses accompanying DADA2 + PacBio Manuscript

Presentation-Ready Data Summary and Analytic Result Tables

All R codes for the guide "Doing Meta-Analysis in R"