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Starred repositories

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A backup application for the Android Open Source Project.

Kotlin 1,341 79 Updated Jan 3, 2025

Free and open public transport routing.

Python 234 58 Updated Jan 6, 2025

This Ansible collection provides battle tested hardening for Linux, SSH, nginx, MySQL

Jinja 4,151 741 Updated Dec 23, 2024

Migrate data from Podcast Addict's to AntennaPod's database

Python 11 Updated Oct 26, 2022

Connecting GWAS summary data to analytical tools

R 21 2 Updated Mar 25, 2024

Python colorspace implementation. Documentation available on https://retostauffer.github.io/python-colorspace/. The latest release is available via the Python Package Index (PyPI) via https://pypi.…

Python 69 15 Updated Oct 29, 2024

sci palettes for matplotlib/seaborn

Python 10 Updated Feb 14, 2022

🦄 Scientific journal and sci-fi themed color palettes for ggplot2

R 675 71 Updated Jul 20, 2024

Snakemake workflow for bulk RNA sequencing with pytximport.

Python 4 Updated Sep 30, 2024

Feature-rich Python implementation of the tximport package for gene count estimation.

Python 31 1 Updated Nov 28, 2024

RAP paralelization orchestration engine template: Optimised driver and worker scripts for genomic analyses on UKBB cloud-based, Research Analysis Platform (RAP)

Shell 1 Updated Jun 6, 2024

ShellCheck, a static analysis tool for shell scripts

Haskell 36,705 1,785 Updated Dec 14, 2024

A shell parser, formatter, and interpreter with bash support; includes shfmt

Go 7,420 352 Updated Jan 3, 2025

AlphaFold 3 inference pipeline.

Python 5,761 688 Updated Dec 20, 2024

📚 Freely available programming books

HTML 346,417 62,412 Updated Jan 3, 2025

⭐Github Ranking⭐ Github stars and forks ranking list. Github Top100 stars list of different languages. Automatically update daily. | Github仓库排名,每日自动更新

Python 7,327 475 Updated Oct 23, 2024

🧑‍🏫 60+ Implementations/tutorials of deep learning papers with side-by-side notes 📝; including transformers (original, xl, switch, feedback, vit, ...), optimizers (adam, adabelief, sophia, ...), ga…

Python 57,689 5,875 Updated Aug 24, 2024

A Go package for implementing a FUSE file system.

Go 501 106 Updated Oct 25, 2024

C++ library and cmdline tools for parsing and manipulating VCF files with python and zig bindings

C++ 629 221 Updated Nov 27, 2024

a python extension of CNVnator -- a tool for CNV analysis from depth-of-coverage by mapped reads

Python 191 27 Updated Aug 1, 2024

Integrative Genomics Viewer. Fast, efficient, scalable visualization tool for genomics data and annotations

Java 650 387 Updated Jan 5, 2025

A fast CSV command line toolkit written in Rust.

Rust 10,454 324 Updated Jun 20, 2024

Terminal in browser over http/https. (Ajaxterm/Anyterm alternative, but much better)

TypeScript 4,422 680 Updated Jan 6, 2025

Share your terminal over the web

C 8,338 906 Updated Nov 26, 2024

DNAnexus platform client libraries

Python 91 86 Updated Dec 24, 2024

Generate beautiful summary tables from pandas dataframes

Python 22 1 Updated Oct 3, 2024

Powerful statistics for VCF files

Python 67 15 Updated Oct 13, 2023

A collection of command line tools for working with sequencing data

HTML 51 16 Updated Dec 17, 2024

Variable Inspector extension for Jupyterlab

TypeScript 1,126 97 Updated Dec 22, 2024

Tool for plotting sequencing data along genomic coordinates.

Python 254 8 Updated Nov 20, 2024
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