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HKUST
- Hong Kong, China
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21:37
(UTC +08:00)
Genetic
A flexible tool for the multi-resolution localization of causal variants across the genome, accounting for population structure.
MsCAVIAR identifies causal variants using GWAS summary statistics from multiple studies, e.g. trans-ethnic fine mapping
RFMIX - Local Ancestry and Admixture Inference Version 2
Official code repository for GATK versions 4 and up
A simple way to update kgp IDs from the Illumina-Human Omni 2.5M array to rs IDs.
This repository contains chromosome/contig name mappings between UCSC <-> Ensembl <-> Gencode for a variety of genomes.
A Javascript/d3 embeddable plugin for interactively visualizing statistical genetic data from customizable sources.
Python command line tool for Multi-Trait Analysis of GWAS (MTAG)
R-package for structural equation modeling based on GWAS summary data
tools for adding mutations to existing .bam files, used for testing mutation callers
Stratified squared trans-ethnic genetic correlation
An R package for performing association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using STAARpipeline
VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.
Contamination from Homozygous Alternate Reference Reads
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
multi_tbx: a simple tool for indexing VCF files and extract variant records for variant data stored in multiple VCF files.
Repository for code to produce phased 1000 Genomes Project haplotypes called against the CHM13v2 T2T reference genome.
📮 A Memory-efficient, Visualization-enhanced, and Parallel-accelerated Tool For Genome-Wide Association Study
Biological sequence analysis for the modern age.