an interactive visualization and interpretation framework of reference-projected pangenome graphs

Bayesian model selection approach for mediation

RNA-seq prediction with deep convolutional neural networks.

Pangenome graphs visualisation, distance computing, reconstruction of sequences and other utility functions

Analysis of shared parts of a pangenome

Recombination between heterologous human acrocentric chromosomes

Merge structural variations (SV) for pangenome VCF

allele-specific sequencing data analysis pipeline

Code repository for analysis performed on NABEC/HBCC ONT WGS data release, including QTL analysis workflows.

整理常用的群体遗传学分析流程和脚本

T1K is a versatile methods to genotype highly polymorphic genes (e.g. KIR, HLA) with bulk or single-cell RNA-seq, WGS or WES data.

Visualize and annotate genomic coverage with ggplot2

Tissue-Gene Fine-Mapping

STICI source code

Identification of transposable element families from pangenome polymorphisms

➡️️➡️️⬅️️➡️️ Draw gene arrow maps in ggplot2

regenie is a C++ program for whole genome regression modelling of large genome-wide association studies.

Generalized linear Mixed Model Association Tests

Biological sequence analysis for the modern age.

High-precision TE Annotator

A grammar of graphics for comparative genomics

A list of software for pangenomics

Application of pan-genome for population

📊 Circular and Rectangular Manhattan Plot

📮 A Memory-efficient, Visualization-enhanced, and Parallel-accelerated Tool For Genome-Wide Association Study

Tandem repeat genotyping and visualization from PacBio HiFi data

Ultra-fast preprocessing and quality control for long-read sequencing data