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sudmantlab

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  1. loco-pipe loco-pipe Public

    loco-pipe is an automated Snakemake pipeline that streamlines a set of essential population genomic analyses for low-coverage whole genome sequencing (lcWGS) data

    Python 16 2

  2. amylase_diversity_project amylase_diversity_project Public

    Python 13 1

  3. rockfishgenomeproject rockfishgenomeproject Public

    HTML 5 2

  4. gene_expression_aging gene_expression_aging Public

    R 4

  5. conplastic_mt_profiling conplastic_mt_profiling Public

    Jupyter Notebook 2

  6. sudmantlab.github.io sudmantlab.github.io Public

    lab web page

    HTML 1 2

Repositories

Showing 10 of 25 repositories
  • rishi Public
    sudmantlab/rishi’s past year of commit activity
    0 0 0 0 Updated Feb 8, 2025
  • sudmantlab.github.io Public

    lab web page

    sudmantlab/sudmantlab.github.io’s past year of commit activity
    HTML 1 2 0 0 Updated Jan 31, 2025
  • loco-pipe Public

    loco-pipe is an automated Snakemake pipeline that streamlines a set of essential population genomic analyses for low-coverage whole genome sequencing (lcWGS) data

    sudmantlab/loco-pipe’s past year of commit activity
    Python 16 GPL-3.0 2 5 0 Updated Jan 30, 2025
  • amylase_diversity_project Public
    sudmantlab/amylase_diversity_project’s past year of commit activity
    Python 13 1 1 0 Updated Dec 13, 2024
  • MyotisGenomeAssembly Public

    A home for our assembly pipeline for Myotis genomes using HiFi + Hi-C

    sudmantlab/MyotisGenomeAssembly’s past year of commit activity
    HTML 0 0 0 0 Updated Nov 27, 2024
  • conplastic_mt_profiling Public
    sudmantlab/conplastic_mt_profiling’s past year of commit activity
    Jupyter Notebook 2 0 0 0 Updated Oct 15, 2024
  • visualization_hub Public
    sudmantlab/visualization_hub’s past year of commit activity
    0 0 0 0 Updated Jun 5, 2024
  • trackhubs Public
    sudmantlab/trackhubs’s past year of commit activity
    0 0 0 0 Updated Jan 10, 2024
  • snakemake_workshop Public Forked from ccbskillssem/snakemake_fa23

    A copy of the Fall 2023 CCB Skills Seminar on snakemake, developed and taught by @stacy-l.

    sudmantlab/snakemake_workshop’s past year of commit activity
    Python 0 4 0 0 Updated Oct 16, 2023
  • rockfishgenomeproject Public
    sudmantlab/rockfishgenomeproject’s past year of commit activity
    HTML 5 2 0 0 Updated Oct 2, 2023
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