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Large Medical Image Foundation Model
Diffusion Probabilistic Model-based Swin Transformer for Medical Image Registration
Code for the Nature Scientific Reports paper "Pathologist-level classification of histologic patterns on resected lung adenocarcinoma slides with deep neural networks." A sliding window framework f…
This Repo Will contain the Preprocessing Code for 3D Medical Imaging
A Python tool to generate MR signals based on multi-pulse sequences (either balanced or unbalanced)
Open source software for medical image processing from the Empenn team
This repository is mainly dedicated for listing the recent research advancements in the application of Self-Supervised-Learning in medical images computing field
Label Studio is a multi-type data labeling and annotation tool with standardized output format
A collection of papers about Transformer in the field of medical image analysis.
Easy-to-use image segmentation library with awesome pre-trained model zoo, supporting wide-range of practical tasks in Semantic Segmentation, Interactive Segmentation, Panoptic Segmentation, Image …
The PyTorch re-implement of a 3D CNN Tracker to extract coronary artery centerlines with state-of-the-art (SOTA) performance. (paper: 'Coronary artery centerline extraction in cardiac CT angiograph…
This Repo containes the implemnetation of generating Guided-GradCAM for 3D medical Imaging using Nifti file in tensorflow 2.0. Different input files can be used in that case need to edit the input …
Official public repository for the XCP Engine. This tool is deprecated in favor of XCP-D and ASLPrep.
A python module for scientific analysis of 3D data based on VTK and Numpy
Matlab/octave tool to read twix raw data from Siemens MRI scanners.
[IEEE Transactions on Medical Imaging/TMI] This repo is the official implementation of "LViT: Language meets Vision Transformer in Medical Image Segmentation"
An open source implementation of CLIP.
How Distance Transform Maps Boost Segmentation CNNs: An Empirical Study
SOTA medical image segmentation methods based on various challenges
Pytorch implementation of convolutional neural network visualization techniques
MetricConv: An adaptive convolutional neural network for graphs and meshes
Interactive deep learning book with multi-framework code, math, and discussions. Adopted at 500 universities from 70 countries including Stanford, MIT, Harvard, and Cambridge.
Distributed training framework for TensorFlow, Keras, PyTorch, and Apache MXNet.
Semantic segmentation models with 500+ pretrained convolutional and transformer-based backbones.
Pytorch Geometric Tutorials