expressions on VCFs

A library to interface with a locally running Ollama server instance

Contains a simple live demo of MNIST training and classification using Nim + Arraymancer + Plotly

🤖 Just a command runner

simple reader and writer for gzipped (and regular) files

A modern Python package and dependency manager supporting the latest PEP standards

🎊 Soothing pastel theme for mdBook

Simple tool to plot input piped to it

horizontal pileup

seqcover allows users to view coverage for hundreds of genes and dozens of samples

Cli tool to fetch download statistics for GitHub repositories.

fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing

Automatic wrapping of C headers in Nim

🚀 Generate GitHub profile README easily with the latest add-ons like visitors count, GitHub stats, etc using minimal UI.

A Beautiful Markdown Parser in the Nim World.

miscellaneous scripts for bioinformatics/genomics that dont merit their own repo.

Wrapper and some simple high-level bindings for the HDF5 library for the Nim language

igv.js standalone page generator and automatic configuration to view bam/cram/vcf/bed. "working in under 1 minute"

A port of ggplot2 for Nim

nim wrapper for htslib for parsing genomics data files

DataFrame API written in Nim, enabling fast out-of-core data processing

command-line querying+conversion of bigwigs and a nim wrapper for dpryan's libbigwig

nim wrapper for lhs/ksw2 for fast smith-waterman

A wrapper for the cMPFIT library for the Nim programming language, https://vindaar.github.io/nim-mpfit/

useful command-line tools written to showcase hts-nim

genotype :: ped correspondence check, ancestry check, sex check. directly, quickly on VCF