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update docs
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shenwei356 committed Jan 31, 2024
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12 changes: 6 additions & 6 deletions CHANGELOG.md
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- [SeqKit v2.7.0](https://github.com/shenwei356/seqkit/releases/tag/v2.7.0) - 2024-xx-xx
- [SeqKit v2.7.0](https://github.com/shenwei356/seqkit/releases/tag/v2.7.0) - 2024-01-31
[![Github Releases (by Release)](https://img.shields.io/github/downloads/shenwei356/seqkit/v2.7.0/total.svg)](https://github.com/shenwei356/seqkit/releases/tag/v2.7.0)
- `seqkit`:
- grouping subcommands in help message.
- Grouping subcommands in help message, which is intuitive for beginners.
- `seqkit grep`:
- new flag: `-D/--allow-duplicated-patterns` for outputting records multiple times when duplicated patterns are given. [#427](https://github.com/shenwei356/seqkit/issues/427)
- New flag: `-D/--allow-duplicated-patterns` for outputting records multiple times when duplicated patterns are given. [#427](https://github.com/shenwei356/seqkit/issues/427)
- `seqkit subseq`:
- Use the ID regular expression from the option `--id-regexp` to create FASTA index file. This solves the panic happened for sequences containing tabs in the headers. [#432](https://github.com/shenwei356/seqkit/issues/432)
- `seqkit split/sort/shuffle`:
- When using two-pass mode (`-2/--two-pass`), replace possible tabs in the sequence header.
- When using the two-pass mode (`-2/--two-pass`), replace possible tabs in the sequence header.
- `seqkit rmdup`:
- Write empty file of duplicate numbers and lists of IDs even if there's no duplicates when using `-D/--dup-num-file`. [#436](https://github.com/shenwei356/seqkit/issues/436)
- Write an empty file of duplicate numbers and lists of IDs even if there's no duplicates when using `-D/--dup-num-file`. [#436](https://github.com/shenwei356/seqkit/issues/436)
- `seqkit stats`:
- new flag `-S/--skip-file-check` to skip input file checking when given files or a file list. It's very useful if you will run on millions of files.
- New flag `-S/--skip-file-check` to skip input file checking when given files or a file list. It's very useful if you run it with millions of files.
- [SeqKit v2.6.1](https://github.com/shenwei356/seqkit/releases/tag/v2.6.1) - 2023-11-18
[![Github Releases (by Release)](https://img.shields.io/github/downloads/shenwei356/seqkit/v2.6.1/total.svg)](https://github.com/shenwei356/seqkit/releases/tag/v2.6.1)
- `seqkit`:
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