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add doc. shenwei356#462
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shenwei356 committed May 17, 2024
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2 changes: 2 additions & 0 deletions doc/docs/usage.md
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Expand Up @@ -2552,6 +2552,8 @@ If you want to cut a sequence into multiple segments.
Attention:
1. For the two-pass mode (-2/--two-pass), The flag -U/--update-faidx is recommended to
ensure the .fai file matches the FASTA file.
2. For splitting by sequence IDs in Windows/MacOS, where the file systems might be case-insensitive,
output files might be overwritten if they are only different in cases, like Abc and ABC.
The definition of region is 1-based and with some custom design.
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2 changes: 2 additions & 0 deletions seqkit/cmd/split.go
Original file line number Diff line number Diff line change
Expand Up @@ -63,6 +63,8 @@ If you want to cut a sequence into multiple segments.
Attention:
1. For the two-pass mode (-2/--two-pass), The flag -U/--update-faidx is recommended to
ensure the .fai file matches the FASTA file.
2. For splitting by sequence IDs in Windows/MacOS, where the file systems might be case-insensitive,
output files might be overwritten if they are only different in cases, like Abc and ABC.
The definition of region is 1-based and with some custom design.
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