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pb-metagenomics-tools-for-ONT Public
Forked from PacificBiosciences/pb-metagenomics-toolsTools and pipelines tailored to using Oxford Nanopores (ONT) reads for metagenomics
HTML BSD 3-Clause Clear License UpdatedSep 10, 2024 -
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AncientMetagenomeDir Public
Forked from SPAAM-community/AncientMetagenomeDirRepository containing lists of all published ancient metagenomic (and related) samples and libraries
HTML Creative Commons Attribution 4.0 International UpdatedJul 30, 2024 -
sourcetracker2 Public
Forked from caporaso-lab/sourcetracker2SourceTracker2
Python BSD 3-Clause "New" or "Revised" License UpdatedJul 10, 2024 -
clinker Public
Forked from gamcil/clinkerGene cluster comparison figure generator
Python MIT License UpdatedJun 4, 2024 -
seqkit Public
Forked from shenwei356/seqkitA cross-platform and ultrafast toolkit for FASTA/Q file manipulation
Go MIT License UpdatedMay 17, 2024 -
squigualiser Public
Forked from hiruna72/squigualiserVisualise and analyse nanopore (ONT) raw signals
Python MIT License UpdatedMay 9, 2024 -
megahit Public
Forked from voutcn/megahitUltra-fast and memory-efficient (meta-)genome assembler
C++ GNU General Public License v3.0 UpdatedApr 30, 2024 -
Perfect-bacterial-genome-tutorial Public
Forked from rrwick/Perfect-bacterial-genome-tutorialPython UpdatedFeb 28, 2024 -
megan-ce Public
Forked from husonlab/megan-ceMEGAN Community Edition
Java GNU General Public License v3.0 UpdatedFeb 22, 2024 -
diamond Public
Forked from bbuchfink/diamondAccelerated BLAST compatible local sequence aligner.
C++ GNU General Public License v3.0 UpdatedFeb 14, 2024 -
DIGS-tool Public
Forked from giffordlabcvr/DIGS-toolDatabase-Integrated Genome Screening (DIGS) tool. Explore genomes interactively using BLAST and a relational database.
Perl GNU Affero General Public License v3.0 UpdatedJan 23, 2024 -
andi Public
Forked from EvolBioInf/andi♥ Efficient Estimation of Evolutionary Distances
C GNU General Public License v3.0 UpdatedDec 30, 2023 -
aplot Public
Forked from YuLab-SMU/aplotDecorate a plot with associated information
R UpdatedOct 12, 2023 -
MetaMaps Public
Forked from DiltheyLab/MetaMapsLong-read metagenomic analysis
Perl Other UpdatedOct 10, 2023 -
pymol-open-source Public
Forked from schrodinger/pymol-open-sourceOpen-source foundation of the user-sponsored PyMOL molecular visualization system.
C Other UpdatedSep 25, 2023 -
Pymol-script-repo Public
Forked from Pymol-Scripts/Pymol-script-repoCollected scripts for Pymol
Python UpdatedJul 16, 2023 -
factoextra Public
Forked from kassambara/factoextraExtract and Visualize the Results of Multivariate Data Analyses
R UpdatedJul 5, 2023 -
gggenomes Public
Forked from thackl/gggenomesA grammar of graphics for comparative genomics
R MIT License UpdatedJun 13, 2023 -
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gggenes Public
Forked from wilkox/gggenes➡️️➡️️⬅️️➡️️ Draw gene arrow maps in ggplot2
R UpdatedJun 10, 2023 -
MMseqs2 Public
Forked from soedinglab/MMseqs2MMseqs2: ultra fast and sensitive search and clustering suite
C GNU General Public License v3.0 UpdatedJun 9, 2023 -
seq-scripts-1 Public
Forked from thackl/seq-scriptsscripts for sequence and feature conversion, annotation, analysis ...
Perl MIT License UpdatedMay 16, 2023 -
NanoCLUST Public
Forked from genomicsITER/NanoCLUSTNanoCLUST is an analysis pipeline for UMAP-based classification of amplicon-based full-length 16S rRNA nanopore reads
Nextflow MIT License UpdatedApr 13, 2023 -
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Prodigal Public
Forked from hyattpd/ProdigalProdigal Gene Prediction Software
C GNU General Public License v3.0 UpdatedJan 29, 2023 -
bioinformatics-tools-1 Public
Forked from shenwei356/awesomeAwesome resources on Bioinformatics, data science, machine learning, programming language (Python, Golang, R, Perl) and miscellaneous stuff.
MIT License UpdatedJan 9, 2023 -
Unicycler Public
Forked from rrwick/Unicyclerhybrid assembly pipeline for bacterial genomes
C++ GNU General Public License v3.0 UpdatedDec 1, 2022 -
microbiomeutilities Public
Forked from microsud/microbiomeutilitiesThe is mostly a wrapper tool using phyloseq and microbiome R packages.
R Other UpdatedNov 23, 2022