updated the docs

docs/source/conf.py

@@ -12,16 +12,18 @@
 HERE = Path(__file__).parent
 sys.path[:0] = [str(HERE.parent), str(HERE / "extensions")]
 
-import multigrate as mtg
+import multigrate
 
 # -- Project information -----------------------------------------------------
 
 project = "multigrate"
-copyright = "2022, Anastasia Litinetskaya, Mohammad Lotfollahi"
+copyright = "2022, TheisLab, ICB"
 author = "Anastasia Litinetskaya, Mohammad Lotfollahi"
 
 # The full version, including alpha/beta/rc tags
-release = "1.0.0"
+version = multigrate.__version__
+# The full version, including alpha/beta/rc tags.
+release = multigrate.__version__
 
 
 # -- General configuration ---------------------------------------------------

multigrate/__init__.py

@@ -2,12 +2,25 @@
 
 __all__ = ["data", "distributions", "metrics", "model", "module", "nn", "train"]
 
-__author__ = ', '.join([
-    'Alireza Omidi',
-    'Anastasia Litinetskaya',
-    'Mohammad Lotfollahi',
-])
-
-__email__ = ', '.join([
-    '[email protected]',
-])
+
+try:
+    import importlib.metadata as importlib_metadata
+except:
+    import importlib_metadata
+
+package_name = "multigrate"
+__version__ = importlib_metadata.version(package_name)
+
+__author__ = ", ".join(
+    [
+        "Alireza Omidi",
+        "Anastasia Litinetskaya",
+        "Mohammad Lotfollahi",
+    ]
+)
+
+__email__ = ", ".join(
+    [
+        "[email protected]",
+    ]
+)

pyproject.toml

@@ -5,6 +5,7 @@ description = "multiomic data integration for signle-cell genomics"
 authors = ["Anastasia Litinetskaya <[email protected]>", "Mohammad Lotfollahi <[email protected]>"]
 homepage = "https://github.com/theislab/multigrate/"
 license = "BSD-3-Clause"
+readme = "README.md"
 
 [tool.poetry.dependencies]
 adjustText = { version = "*", optional = true }
@@ -28,7 +29,6 @@ leidenalg = "^0.8.9"
 louvain = "^0.7.1"
 torch = "^1.11.0"
 scanpy = "^1.9.0"
-ipython = { version = ">=7.1.1", optional = true }
 python-igraph = { version = "*", optional = true }
 scanpydoc = { version = ">=0.5", optional = true }
 scikit-misc = { version = ">=0.1.3", optional = true }