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* initial commit of asv config to xarray repo * add some basic benchmarks for dataset io * cleanup benchmarks.__init__.py * intermediate refactor for i/o tests * add mf_dataset benchmarks * add benchmarks for open-only using open_mfdataset
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Joe Hamman
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Jul 26, 2017
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{ | ||
// The version of the config file format. Do not change, unless | ||
// you know what you are doing. | ||
"version": 1, | ||
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// The name of the project being benchmarked | ||
"project": "xarray", | ||
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// The project's homepage | ||
"project_url": "http://xarray.pydata.org/", | ||
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// The URL or local path of the source code repository for the | ||
// project being benchmarked | ||
"repo": "..", | ||
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// List of branches to benchmark. If not provided, defaults to "master" | ||
// (for git) or "default" (for mercurial). | ||
"branches": ["master"], // for git | ||
// "branches": ["default"], // for mercurial | ||
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// The DVCS being used. If not set, it will be automatically | ||
// determined from "repo" by looking at the protocol in the URL | ||
// (if remote), or by looking for special directories, such as | ||
// ".git" (if local). | ||
"dvcs": "git", | ||
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// The tool to use to create environments. May be "conda", | ||
// "virtualenv" or other value depending on the plugins in use. | ||
// If missing or the empty string, the tool will be automatically | ||
// determined by looking for tools on the PATH environment | ||
// variable. | ||
"environment_type": "conda", | ||
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// timeout in seconds for installing any dependencies in environment | ||
// defaults to 10 min | ||
"install_timeout": 600, | ||
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// the base URL to show a commit for the project. | ||
// "show_commit_url": "http://github.com/owner/project/commit/", | ||
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// The Pythons you'd like to test against. If not provided, defaults | ||
// to the current version of Python used to run `asv`. | ||
"pythons": ["2.7", "3.6"], | ||
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// The matrix of dependencies to test. Each key is the name of a | ||
// package (in PyPI) and the values are version numbers. An empty | ||
// list or empty string indicates to just test against the default | ||
// (latest) version. null indicates that the package is to not be | ||
// installed. If the package to be tested is only available from | ||
// PyPi, and the 'environment_type' is conda, then you can preface | ||
// the package name by 'pip+', and the package will be installed via | ||
// pip (with all the conda available packages installed first, | ||
// followed by the pip installed packages). | ||
// | ||
// "matrix": { | ||
// "numpy": ["1.6", "1.7"], | ||
// "six": ["", null], // test with and without six installed | ||
// "pip+emcee": [""], // emcee is only available for install with pip. | ||
// }, | ||
"matrix": { | ||
"numpy": [""], | ||
"pandas": [""], | ||
"netcdf4": [""], | ||
"scipy": [""], | ||
"bottleneck": ["", null], | ||
"dask": ["", null], | ||
}, | ||
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// Combinations of libraries/python versions can be excluded/included | ||
// from the set to test. Each entry is a dictionary containing additional | ||
// key-value pairs to include/exclude. | ||
// | ||
// An exclude entry excludes entries where all values match. The | ||
// values are regexps that should match the whole string. | ||
// | ||
// An include entry adds an environment. Only the packages listed | ||
// are installed. The 'python' key is required. The exclude rules | ||
// do not apply to includes. | ||
// | ||
// In addition to package names, the following keys are available: | ||
// | ||
// - python | ||
// Python version, as in the *pythons* variable above. | ||
// - environment_type | ||
// Environment type, as above. | ||
// - sys_platform | ||
// Platform, as in sys.platform. Possible values for the common | ||
// cases: 'linux2', 'win32', 'cygwin', 'darwin'. | ||
// | ||
// "exclude": [ | ||
// {"python": "3.2", "sys_platform": "win32"}, // skip py3.2 on windows | ||
// {"environment_type": "conda", "six": null}, // don't run without six on conda | ||
// ], | ||
// | ||
// "include": [ | ||
// // additional env for python2.7 | ||
// {"python": "2.7", "numpy": "1.8"}, | ||
// // additional env if run on windows+conda | ||
// {"platform": "win32", "environment_type": "conda", "python": "2.7", "libpython": ""}, | ||
// ], | ||
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// The directory (relative to the current directory) that benchmarks are | ||
// stored in. If not provided, defaults to "benchmarks" | ||
"benchmark_dir": "benchmarks", | ||
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// The directory (relative to the current directory) to cache the Python | ||
// environments in. If not provided, defaults to "env" | ||
"env_dir": ".asv/env", | ||
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// The directory (relative to the current directory) that raw benchmark | ||
// results are stored in. If not provided, defaults to "results". | ||
"results_dir": ".asv/results", | ||
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// The directory (relative to the current directory) that the html tree | ||
// should be written to. If not provided, defaults to "html". | ||
"html_dir": ".asv/html", | ||
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// The number of characters to retain in the commit hashes. | ||
// "hash_length": 8, | ||
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// `asv` will cache wheels of the recent builds in each | ||
// environment, making them faster to install next time. This is | ||
// number of builds to keep, per environment. | ||
// "wheel_cache_size": 0 | ||
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// The commits after which the regression search in `asv publish` | ||
// should start looking for regressions. Dictionary whose keys are | ||
// regexps matching to benchmark names, and values corresponding to | ||
// the commit (exclusive) after which to start looking for | ||
// regressions. The default is to start from the first commit | ||
// with results. If the commit is `null`, regression detection is | ||
// skipped for the matching benchmark. | ||
// | ||
// "regressions_first_commits": { | ||
// "some_benchmark": "352cdf", // Consider regressions only after this commit | ||
// "another_benchmark": null, // Skip regression detection altogether | ||
// } | ||
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// The thresholds for relative change in results, after which `asv | ||
// publish` starts reporting regressions. Dictionary of the same | ||
// form as in ``regressions_first_commits``, with values | ||
// indicating the thresholds. If multiple entries match, the | ||
// maximum is taken. If no entry matches, the default is 5%. | ||
// | ||
// "regressions_thresholds": { | ||
// "some_benchmark": 0.01, // Threshold of 1% | ||
// "another_benchmark": 0.5, // Threshold of 50% | ||
// } | ||
} |
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from __future__ import absolute_import | ||
from __future__ import division | ||
from __future__ import print_function | ||
import itertools | ||
import random | ||
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import numpy as np | ||
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np.random.seed(10) | ||
_counter = itertools.count() | ||
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def requires_dask(): | ||
try: | ||
import dask | ||
except ImportError: | ||
raise NotImplementedError | ||
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def randn(shape, frac_nan=None, chunks=None): | ||
if chunks is None: | ||
x = np.random.standard_normal(shape) | ||
else: | ||
import dask.array as da | ||
x = da.random.standard_normal(shape, chunks=chunks) | ||
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if frac_nan is not None: | ||
inds = random.sample(range(x.size), int(x.size * frac_nan)) | ||
x.flat[inds] = np.nan | ||
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return x |
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