Genometric / Di4 Star 3 Code Issues Pull requests 1D intervals incremental inverted index genomics inverted-index spatial-index indexing-engine temporal-data genomics-search ngs-data indexing-querying chip-seq-data di4 di3 Updated Jul 29, 2019 C#
cosmoskaluga / optimalTAD Star 2 Code Issues Pull requests Topologically Associating Domain optimal set prediction using Armatus software bioinformatics-pipeline tads chip-seq-data hic-analysis armatus Updated Dec 5, 2024 Python
sajadamouei / chip-seq-dataset-decoding Star 2 Code Issues Pull requests Decode coverage.bedGraph files that use the run-length encoding format. coverage machine-learning bed bedgraph run-length-decoding chip-seq-data Updated Apr 27, 2023 Jupyter Notebook
lakhanp1 / chipmine Star 1 Code Issues Pull requests R package for exploratory analysis of ChIPseq data exploratory-analysis chipseq chip-seq-data Updated Aug 1, 2022 R
sebastian-gregoricchio / SPACCa Star 0 Code Issues Pull requests Snakemake Pipeline for the Analyses of ChIP-seq data in Cancer samples somatic-variants mutation gatk mutations chip-seq somatic-mutations normalization mutation-analysis copynumber macs chip-seq-callers macs2 chipseq somatic-indels gatk4 chip-seq-data chip-seq-analysis chip-seq-peaks somatic-variant Updated Oct 18, 2024 Python
sivkri / Schizosaccharomyces-pombe-Chip-seq-analysis Star 0 Code Issues Pull requests After getting the bed file from the Peak calling, we can annotate and create all downstream analysis of two sets of data transcription-factors epigenetics chip-seq functional-genomics chip-seq-data chip-seq-analysis regulatory-elements chip-seq-pipeline epigenetics-data schizosaccharomyces-pombe Updated Jun 9, 2023 R