Prepares a SARS-CoV-2 submission for GISAID, NCBI or ENA. Can read GISAID or NCBI files, or plain fasta+tsv/csv/xls. Finds files in input directory and merges everything into a single output directory. Auto-detects input file formats. Can submit the results to multiple repositories from the command line.
tsv
genbank
fasta
ncbi
meta-data
ena
sars-cov-2
sarscov2
gisaid-uploader
gisaid-format
gisaid-upload
gisaid-xls
ncbi-ftp
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Updated
May 1, 2022 - Python