Long read based human genomic structural variation detection with cuteSV
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Dec 13, 2024 - Python
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pacbio-data
Here are 25 public repositories matching this topic...
🌈Scaffold genome sequence assemblies using linked or long read sequencing data
science c-plus-plus bioinformatics genome graph assembler scaffold oxford-nanopore 10xgenomics pacbio-data nanopore-sequencing
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Nov 6, 2024 - C++
Small variant, structural variant, and short tandem repeat phasing tool for PacBio HiFi reads
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Sep 25, 2024 - Rust
SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, and -DRB1 genes. Also, it supports both short- and long-read data.
nanopore cancer phase immunity hla-typing pacbio-data local-assembly loh haplotype reads-binning hla-sequence loss-of-heterozygosity genotype-frequency allelic-imbalance human-leukocyte-antigens
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Sep 25, 2024 - C++
LRSDAY: Long-read Sequencing Data Analysis for Yeasts
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Mar 4, 2024 - Perl
rMETL - realignment-based Mobile Element insertion detection Tool for Long read
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Aug 13, 2024 - Python
rMETL - realignment-based Mobile Element insertion detection Tool for Long read
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Oct 4, 2019 - Python
Pipeline to provide high accuracy single molecule consensus sequences from PacBio data using unique molecular identifiers (UMIs).
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Sep 25, 2024 - Python
The `pacmill` python package is a bioinformatics pipeline that is developed to process microbial 16S amplicon sequencing data and produce PDF reports detailing taxonomical assignments along with other statistics.
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May 19, 2022 - Python
A workflow for processing CCS reads of AMF to ASVs using DADA2
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Oct 18, 2022 - R
Hormiphora californensis genome annotation and supplemental materials related to the genome assembly.
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Oct 9, 2020 - HTML
A set of tootkit for dealing with COI amplicons using Pacbio sequencing platform
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Jan 24, 2019 - Perl
a streamlit application for graphical analyisis of pacbiohifi reads
bioinformatics pacbio genome-analysis bioinformatics-analysis pacbio-data sequencing-data pacbio-sequencing pacbio-hifi-sequencing-reads pacbiohifi sequencing-analysis
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Sep 12, 2024 - Python
profiling pacbiokmers and filtering pacbio kmers
golang bioinformatics golang-library pacbio-data pacbio-sequencing pacbio-hifi-sequencing-reads pacbiohifi
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Sep 25, 2024 - Go
pacbiohifi read analyzer using recursion
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Aug 17, 2024 - Python
De novo repeat inference from long reads
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Jul 21, 2021 - Java
SMP: A Salmonella Methylation analysis Pipeline
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Jan 28, 2021 - R
pacbiohifi report classifier for any sequencing startups
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Aug 17, 2024 - Python
Inter-sample analysis of SQANTI classifications
bioinformatics rna-seq liftover tgs pacbio rna-sequencing genome-browser pacbio-data bioinformatics-tool bioinformatics-visualization pacbio-iso-seq sqanti
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Aug 12, 2020 - R
pacbioHifi genome assembly benchmarks
bioinformatics bioinformatics-data genome-sequencing genome-analysis genome-assembly pacbio-data genome-alignment pacbio-sequencing
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Oct 4, 2024 - HTML
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