Official git repository for Biopython (originally converted from CVS)
Protein Graph Library
Toolbox for molecular animations in Blender, powered by Geometry Nodes.
Official release of the ProGen models
A collection of awesome things regarding all omics.
Diffusion models of protein structure; trigonometry and attention are all you need!
A dependency-free cross-platform swiss army knife for PDB files.
Saprot: Protein Language Model with Structural Alphabet (AA+3Di)
User friendly and accurate binder design pipeline
Protein-protein, protein-peptide and protein-DNA docking framework based on the GSO algorithm
Jupyter Dock is a set of Jupyter Notebooks for performing molecular docking protocols interactively, as well as visualizing, converting file formats and analyzing the results.
Scientific Large Language Models: A Survey on Biological & Chemical Domains
[ICLR 2024] Mol-Instructions: A Large-Scale Biomolecular Instruction Dataset for Large Language Models
Official repository for the ProteinGym benchmarks
Evolutionary couplings from protein and RNA sequence alignments
Ribbon diagrams of proteins in #golang.
A collection of research papers for AI-based protein design
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