An R package for visualising cell-cell interactions

popsicleR, a flexible R package aimed at providing most of the necessary quality controls and preliminary information for complete and detailed analysis of single cell RNA-seq data.

CellAnn

Coarse-graining of large single-cell RNA-seq data into metacells

an integrative analysis tool for analysing large-scale single cell RNA-sequencing data

Algorithm for the inference of cell types and lineage trees from single-cell RNA-seq data. This is a novel R package of the RaceID3 and StemID2 method including novel functionalities and performanc…

Methods for decontamination of single cell data

Perform differential expression analysis on multi-sample single cell datasets using linear mixed models

Make TCGA download and prepare easy!

Cell-Centric View of Tissue Transcriptome Measuring Cellular Compositions of Immune Microenvironment From Mouse RNA-Seq Data.

Hierarchical annotation of immune cells n scRNA-Seq data based on ssGSEA algorithm.

FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis

scDissector is an exploratory data analysis tool for clustered single-cell RNA-seq data. The tool has been developed and implemented as R shiny app by Ephraim (Effi) Kenigsberg

Framework for clustering, phenotyping, pseudotiming and inferring gene regulatory networks from single cell data

Awesome AI Chat (ChatGPT4...) , Code (Github Copilot...), Read (ChatPDF...), Paint (Midjourney...), Write (NotionAI...), Audio (Adobe Podcast...), Video (Nova AI...), etc.

A curated list of resources for learning bioinformatics.

Transcriptomics Visualization R package.

scINRB: single-cell gene expression imputation with network regularization and bulk RNA-seq data

Brings SingleCellExperiment objects to the tidyverse

The goal of tidytlg is to generate tables, listings, and graphs (TLG) using Tidyverse.

Codebook from my GWAS cookbook

gwasrapidd: an R package to query, download and wrangle GWAS Catalog data

LASSO for GWAS with summary statistics

LocusCompareR is a R package with visualization tools for comparing two genetic association datasets.

Pan-Cancer Single Cell Classifier

rCASC: reproducible Classification Analysis of Single Cell Sequencing Data

BEER: Batch EffEct Remover for single-cell data

Single cell proteomics data processing