An R Package for Discovering Rhythmicity in Biological Data with an Interactive Web Interface

Scripts used to analyse RNA-seq and RNA-FISH data for the paper: Cold-induced chromatin compaction and nuclear retention of clock mRNAs resets the circadian rhythm.

PHATE (Potential of Heat-diffusion for Affinity-based Transition Embedding) is a tool for visualizing high dimensional data.

AlphaFold 3 inference pipeline.

Arduino based Motion Platform Controller

A curated collection of Nextflow implementation patterns

A package for empirical simulation of nascent RNA data

R package with various tools for metagene analysis

A Zotero plugin for syncing items and notes into Notion

Tools to analyze Dip-C (or other 3C/Hi-C) data

AutoGPT is the vision of accessible AI for everyone, to use and to build on. Our mission is to provide the tools, so that you can focus on what matters.

Making Protein folding accessible to all!

In-depth analysis of normalization and transformation methods for building coexpression networks from RNA-seq data.

Contains simulation code for evaluating RNA-Seq normalization methods when assumptions are violated

Nascent Transcription Processing Pipeline

various tools and addons to fidelrams deepTools python suite

(Not Offical) BBMap short read aligner, and other bioinformatic tools.

GitHub Actions for the R community

Integrated analysis for scRNA and scATAC seq data 🚀

Analysis for Tudek et al and Schmid et al

List of papers about Proteins Design using Deep Learning

Mutation Impact Predition Based on Network Properties

RNASeq-Pipeline for Quantification and Enrichment Analysis

Docker for 4DN Hi-C processing pipeline

A cool place to store your Hi-C

Workshop on measuring, analyzing, and visualizing the 3D genome with Hi-C data.

A workflow to get rid of redundant mutations

Personalized Network-based Anti-Cancer Therapy Appointment