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pyGenomeTracks Public
Forked from deeptools/pyGenomeTrackspython module to plot beautiful and highly customizable genome browser tracks
Python GNU General Public License v3.0 UpdatedMar 5, 2024 -
bio-scripts Public
Forked from kullrich/bio-scriptscollection of scripts for bioinformatic analysis
Python Other UpdatedFeb 16, 2024 -
CodeSpringLab Public
Forked from RadUtama/CodeSpringLabCollection of bioinformatics pipelines and scripts for Cold Spring Harbor Laboratory created by BSR (Bioinformatics shared resources)
Jupyter Notebook UpdatedFeb 15, 2024 -
BioinfUtil Public
Forked from acarafat/BioinfUtilRegularly used bioinformatics script for different purposes
Python UpdatedFeb 14, 2024 -
juicer Public
Forked from aidenlab/juicerA One-Click System for Analyzing Loop-Resolution Hi-C Experiments
Shell MIT License UpdatedFeb 12, 2024 -
scripts Public
Forked from bmichanderson/scriptsA place to store my bioinformatics scripts
Python UpdatedFeb 8, 2024 -
custom_scripts Public
Forked from AkramMendez/custom_scriptsGeneral repository with custom scripts for data processing, bioinformatic workflows and downstream analysis
HTML UpdatedFeb 6, 2024 -
NGSpipe2go Public
Forked from amazingshi/NGSpipe2goa set of NGS pipelines
R GNU General Public License v3.0 UpdatedFeb 6, 2024 -
bulk-HiC-analysis Public
Forked from richard6876/bulk-HiC-analysisbulk hic analysis code (bash & python)
Jupyter Notebook UpdatedJan 8, 2024 -
HiC_tools Public
Forked from mdozmorov/HiC_toolsA collection of tools for Hi-C data analysis
MIT License UpdatedDec 14, 2023 -
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Cancer_notes Public
Forked from mdozmorov/Cancer_notesA continually expanding collection of cancer genomics notes and data
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2022-mcf10a-cancer-progression Public
Forked from paulsengroup/2022-mcf10a-cancer-progressionJupyter Notebook MIT License UpdatedNov 15, 2023 -
hic-pipeline Public
Forked from ENCODE-DCC/hic-pipelineHiC uniform processing pipeline
WDL MIT License UpdatedNov 8, 2023 -
HiC_data Public
Forked from mdozmorov/HiC_dataA (continuously updated) collection of references to Hi-C data. Predominantly human/mouse Hi-C data, with replicates.
MIT License UpdatedOct 11, 2023 -
Bioinfo_scripts Public
Forked from CarolinaPB/Bioinfo_scriptsMisc scripts than can be useful for bioinformatics
Python UpdatedSep 20, 2023 -
fuc Public
Forked from amazingshi/fucFrequently used commands in bioinformatics
Python MIT License UpdatedSep 9, 2023 -
mustache Public
Forked from ay-lab/mustacheMulti-scale Detection of Chromatin Loops from Hi-C and Micro-C Maps using Scale-Space Representation
Python MIT License UpdatedAug 29, 2023 -
HiC-Pro Public
Forked from nservant/HiC-ProHiC-Pro: An optimized and flexible pipeline for Hi-C data processing
Python Other UpdatedAug 25, 2023 -
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HiC-data-analysis Public
Forked from shuzhangcourage/HiC-data-analysisGeneral analysis of HiC data, including compartment A/B, domains and loops.
Python UpdatedFeb 17, 2023 -
public_scripts Public
Forked from peterthorpe5/public_scriptscollection of bioinformatic scripts
Python UpdatedJan 25, 2023 -
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PDX_Decitabine_3DEpigenome Public
Forked from JoannaAch/PDX_Decitabine_3DEpigenomeR UpdatedNov 4, 2022 -
ChIP-seq-analysis Public
Forked from crazyhottommy/ChIP-seq-analysisChIP-seq analysis notes from Ming Tang
Python MIT License UpdatedAug 10, 2022 -
PDXHiC_supplemental Public
Forked from dozmorovlab/PDXHiC_supplementalSupplemental scripts for the PDX Hi-C paper
R UpdatedMay 9, 2022 -
RNA-seq-analysis Public
Forked from crazyhottommy/RNA-seq-analysisRNAseq analysis notes from Ming Tang
Python MIT License UpdatedNov 15, 2021 -
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MCF10APromoterAnalysis Public
Forked from JCSMR-Tremethick-Lab/MCF10APromoterAnalysisProcessing scripts for ChIP/RNA/HiC-Seq data from MCF10A cells and derivative cell lines
R UpdatedJan 29, 2021