Merge pull request Carrion-lab#2 from ismathsadhir/ismathsadhir-patch-1

Update classifier.R to correct variable 'columns2use' to 'column2use'
utguang · Mar 18, 2024 · 78415ae · 78415ae
2 parents bcc06a0 + 2adac8f
commit 78415ae
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/classifier_src/classifier.R b/classifier_src/classifier.R
@@ -78,7 +78,7 @@ args = commandArgs(trailingOnly=TRUE)
 ###Load metadata
 mapping_file <- read.table(args[1], header = T)
 column2use <- args[3]
-mapping_file <- mapping_file[,c('Sample', columns2use)]
+mapping_file <- mapping_file[,c('Sample', column2use)]
 colnames(mapping_file)[2] <- 'Lifestyle'
 ###load and filter matrix
 matrix <- read_delim(args[2], col_names = T, quote = "\"")