Update Snakefile

utguang · Mar 25, 2024 · 8ef24fc · 8ef24fc
1 parent 91602a0
commit 8ef24fc
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/Snakefile b/Snakefile
@@ -281,7 +281,7 @@ rule antismash:
             out_dir = 'intermediate_files/antismash/{genus}_{species}_{str}_{replicon}/',
             threads = THREADS
         shell:
-            'source activate antismash_bacLIFE; antismash --cb-general --cb-knownclusters --cb-subclusters --output-dir {params.out_dir} -c 5 --asf --pfam2go --genefinding-tool prodigal --smcog-trees {input}'
+            'source activate antismash_bacLIFE; antismash --cb-general --cb-knownclusters --cb-subclusters --output-dir {params.out_dir} --asf --pfam2go --genefinding-tool prodigal --smcog-trees {input}'