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University of Washington Bothell/STEM Linux Lab

University of Washington Bothell campus Linux Lab

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  1. stampy stampy Public

    C++ 3

  2. prinseq prinseq Public

    prinseq-lite-0.20.4

    HTML 3 1

  3. scythe scythe Public

    Forked from vsbuffalo/scythe

    A 3'-end adapter contaminant trimmer

    C

  4. breseq breseq Public

    Forked from barricklab/breseq

    breseq is a computational pipeline for finding mutations relative to a reference sequence in short-read DNA re-sequencing data. It is intended for haploid microbial genomes (<20 Mb). breseq is a co…

    HTML

  5. sickle sickle Public

    Forked from najoshi/sickle

    Windowed Adaptive Trimming for fastq files using quality

    C

  6. pear pear Public

    Objective-C

Repositories

Showing 10 of 31 repositories
  • mace Public
    uwb-linux/mace’s past year of commit activity
    C 0 0 0 0 Updated Nov 12, 2019
  • slurm Public

    slurm repository. Originally from https://github.com/SchedMD/slurm

    uwb-linux/slurm’s past year of commit activity
    C 0 0 0 0 Updated Oct 17, 2019
  • samtools Public Forked from samtools/samtools

    Tools (written in C using htslib) for manipulating next-generation sequencing data

    uwb-linux/samtools’s past year of commit activity
    C 0 588 0 0 Updated Oct 16, 2019
  • prinseq Public

    prinseq-lite-0.20.4

    uwb-linux/prinseq’s past year of commit activity
    HTML 3 GPL-3.0 1 0 0 Updated Oct 10, 2019
  • freebayes Public Forked from freebayes/freebayes

    Bayesian haplotype-based genetic polymorphism discovery and genotyping.

    uwb-linux/freebayes’s past year of commit activity
    C++ 0 MIT 266 0 0 Updated Oct 8, 2019
  • snpEff Public
    uwb-linux/snpEff’s past year of commit activity
    Perl 0 0 0 0 Updated Oct 4, 2019
  • clinEff Public
    uwb-linux/clinEff’s past year of commit activity
    CSS 0 0 0 0 Updated Oct 4, 2019
  • vcftools Public

    0.1.13

    uwb-linux/vcftools’s past year of commit activity
    C++ 0 0 0 0 Updated Oct 4, 2019
  • speedseq Public Forked from hall-lab/speedseq

    A flexible framework for rapid genome analysis and interpretation

    uwb-linux/speedseq’s past year of commit activity
    C 0 MIT 117 0 0 Updated Sep 30, 2019
  • picard Public Forked from broadinstitute/picard

    A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.

    uwb-linux/picard’s past year of commit activity
    Java 0 MIT 375 0 0 Updated Sep 13, 2019
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