Methylation Phasing for Nanopore Sequencing

Merging, Annotation, Validation, and Illustration of Structural variants

Read-based phasing of genomic variants, also called haplotype assembly

Ultra-fast methylation calling and event alignment tool for nanopore sequencing data (supports CUDA acceleration)

chromosome-scale haplotyping and Parent-of-origin detection in a single sample

This repository contains data indexes from NIST's Genome in a Bottle project.

Data and analysis for NA12878 genome on nanopore

Improving SNV calling from Nanopore Sequencing

Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling

Megalodon is a research command line tool to extract high accuracy modified base and sequence variant calls from raw nanopore reads by anchoring the information rich basecalling neural network out…

Data from the Human PanGenomics Project

A versatile pairwise aligner for genomic and spliced nucleotide sequences

⛓️ Construct a Physical Map from Linked Reads

Detecting methylation using signal-level features from Nanopore sequencing reads

Clair: Exploring the limit of using deep neural network on pileup data for germline variant calling

Signal-level algorithms for MinION data