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@vanvalenlab

vanvalenlab

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  1. deepcell-tf deepcell-tf Public

    Deep Learning Library for Single Cell Analysis

    Python 442 99

  2. deepcell-label deepcell-label Public

    Cloud-based data annotation tools for biological images

    JavaScript 78 15

  3. kiosk-console kiosk-console Public

    DeepCell Kiosk Distribution for Kubernetes on GKE and AWS

    Shell 35 6

  4. deepcell-applications deepcell-applications Public

    Run DeepCell Applications

    Python 9 6

Repositories

Showing 10 of 37 repositories
  • cellSAM Public

    Codebase for "A Foundation Model for Cell Segmentation"

    vanvalenlab/cellSAM’s past year of commit activity
    Jupyter Notebook 73 10 23 4 Updated Mar 13, 2025
  • torch-mesmer Public

    pytorch implementation of mesmer

    vanvalenlab/torch-mesmer’s past year of commit activity
    Python 0 1 12 1 Updated Jan 23, 2025
  • deepcell-types Public
    vanvalenlab/deepcell-types’s past year of commit activity
    Python 4 1 2 1 Updated Dec 17, 2024
  • DeepCellTypes-2024_Wang_et_al Public
    vanvalenlab/DeepCellTypes-2024_Wang_et_al’s past year of commit activity
    Jupyter Notebook 0 0 0 1 Updated Nov 21, 2024
  • intro-to-deepcell Public archive

    An introduction to deepcell and deep learning

    vanvalenlab/intro-to-deepcell’s past year of commit activity
    Jupyter Notebook 144 26 8 0 Updated Oct 21, 2024
  • deepcell-tf Public

    Deep Learning Library for Single Cell Analysis

    vanvalenlab/deepcell-tf’s past year of commit activity
    Python 442 99 49 (1 issue needs help) 1 Updated Aug 30, 2024
  • Caliban-2024_Schwartz_et_al Public
    vanvalenlab/Caliban-2024_Schwartz_et_al’s past year of commit activity
    Jupyter Notebook 4 Apache-2.0 0 0 0 Updated Aug 8, 2024
  • deepcell-tracking Public

    Track cells and build cell lineages

    vanvalenlab/deepcell-tracking’s past year of commit activity
    Python 33 6 9 (1 issue needs help) 0 Updated Aug 6, 2024
  • deepcell-spots Public

    Deep Learning Library for Spot Detection

    vanvalenlab/deepcell-spots’s past year of commit activity
    Python 15 4 3 0 Updated Mar 15, 2024
  • deepcell-label Public

    Cloud-based data annotation tools for biological images

    vanvalenlab/deepcell-label’s past year of commit activity
    JavaScript 78 15 61 (13 issues need help) 8 Updated Feb 14, 2024
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