Adaptation of CNMF-E (Zhou, Pengcheng, et al., 2018) for the extraction of ABNs calcium signals in very long files (several hours). Modified files are located in PV_scripts.
For a detailed explanation on how to use these codes see:
Method paper.
Please cite the following papers if you use these codes in your research:
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Kumar D, Koyanagi I, Carrier-Ruiz A, Vergara P, Srinivasan S, Sugaya Y, et al. Sparse Activity of Hippocampal Adult-Born Neurons during REM Sleep Is Necessary for Memory Consolidation. Neuron [Internet]. 2020 Jun;1–14. Available from: https://linkinghub.elsevier.com/retrieve/pii/S0896627320303548
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Zhou P, Resendez SL, Rodriguez-Romaguera J, Jimenez JC, Neufeld SQ, Giovannucci A, et al. Efficient and accurate extraction of in vivo calcium signals from microendoscopic video data. Elife [Internet]. 2018 Feb 22;7:1–37. Available from: https://elifesciences.org/articles/28728
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Pnevmatikakis EA, Soudry D, Gao Y, Machado TA, Merel J, Pfau D, et al. Simultaneous Denoising, Deconvolution, and Demixing of Calcium Imaging Data. Neuron. 2016;89(2):299.
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