[pull] master from SMTorg:master #21
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* Fix EI to accept 2D `y_data` as used in GEKPLS * Add test for EI on 2D `y_data`. Simplified `ego.EI()` by removing the y_data argument - now `y_data` is read from the gpr, which is also contains the current values. Refactored training of gpr into private ego method. * Relax ei_gek test assertion and ensure lowercase method names * Relax ei_gek test assertion further. Tolerance should still be adequate for scope of test
* Manage clustered test data when specified * Fix EGO EI change in doc example * FIx naming and comment
…problem (#357) * Add files via upload
* change warning messge from print to warnings.warn() * remove warning formating
* Suppress packaging dependency * Remove numpydoc and matplotlib from setup.py * Update requirements.txt for tests * Update requirements for doc gen (readthedocs) * Use requirements in github actions
* Airfoil Parameters surrogate model example * Format genn example for integration in SMT doc * Fix references Co-authored-by: Sônia Carreira <[email protected]> Co-authored-by: raul-rufato <[email protected]>
* Make x dim checking customizable in subclass * Make mgp use base predict methods * Take into account MGP API change * Update doc example * Rename krg_mgp to mgp
* Update notebooks Co-authored-by: NatOnera <[email protected]> * Re-declare n_comp in GEKPLS to default to 2 Co-authored-by: NatOnera <[email protected]>
Co-authored-by: Paul-Saves <[email protected]>
…379) * fix init: ss GOWER PLS * change for d in cat kernel * update needed for pred, almost there, I hope * fixing * moins d'appel à fitpls, n_comp doublon supprime, mis dans kpls,pb dx vs d for squar exp corrige * ok for PLS cont + new matrix model * add tests * add gower_mat * rhobeg * delete GOWER and FULL_GAUSSIAN, add check_params * pls homo hs bug with squar exp contiuous * add verif for pls * fix 1D PLS * update names and docu (#41) * black * move matrix_data_corr (#43) Co-authored-by: Paul-Saves <[email protected]> Co-authored-by: Rémi Lafage <[email protected]>
* Add kriging sampling methods * Add kriging sampling test * Correct bug test_kriging_sampling_utils
* Move mixed_integer low level functions in utils * Move kernel enum in kriging based * Expose kernel and mixed integer enums as part of surrogate models API * Take into account API change in tests * Take into account API change in tutorial
…ar and quadratic trends (#389) * add output derivative for abs_exp * update for test' ' * correct bug * fix test gekpls * delete div by 0 * add matern32 derivative * add matern52 derivative * add tests * remove duplicate code * clean code * fix finally trends * add a test to avoid further linear trend breaking * black * improve tests * update test
* Update derivative predictions:
Add vectorization tests and update the other tests (thanks to Inês Cardoso)
Clean EGO:
Remove tunneling option.
Add tests for qEI criteria and for SBO in EGO
* revert - Remove tunneling option.
* add tunelling tests
* update for numpy 1.24 * update ego for 1.24 * black * trigger build
Co-authored-by: NatOnera <[email protected]>
) * test for num_range scaled to unit * add xlimits as an option to correct gower distance bouds inconsistency * fix test with 0 non categorical variables * bug with action * remove unused vars * delete a redundant line and correct a pointer issue * update X_cont * fix an error and add a test for future detection * black * fixing EGO seed * update ego * update test * delete the addition of starting optim points
* Remove smt_design_space_ext dependency * Comment skipped tests
* update readme tuto * update tutos * ruff * fix misc * fix kernel applications * update kernels
* fix smt-dse * ruff * fix import * fix imports and doc * Update notebook references Signed-off-by: Emmanuel Ferdman <[email protected]> * fix notebooks by emmanuel ferdman * fix link --------- Signed-off-by: Emmanuel Ferdman <[email protected]> Co-authored-by: Emmanuel Ferdman <[email protected]>
* First implementations of the MFCK(ND 2 fidelity levels) * Updates with the removal of blank lines, checked with ruff, test added * Save changes to SMT_MFCK_tutorial.ipynb * Bugs fixed respect to the HP optimization, MFCK tutorial and test added. Tested over ruff. * Update over mfck file for pass ruff test * Fixed files for pass the ruff test. * Notebook moved to a folder named MFCK in tutorial folder * Improvement in the tutorial notebook of MFCK * Correction in MFCK predict, Addition of 3 level example in tutorial * Add test for more code coverage in mfck.py, modification in mfck.py to avoid code that will not use in the tests * Update for tutorial * Fixing blank lines for pass ruff check * Name for optimal theta changed * optimal theta for mfck changed in notebook * Tutorial MFCK updated * Correction for ruff test * Updtaes of the files following suggested changes, pending of revision * Corrected version of MFCK, Adding option to optimize with nlopt if it's available * Notebook updated
* Update kernel engineering notebooks Co-authored-by: jomorlier <[email protected]> * Linting --------- Co-authored-by: jomorlier <[email protected]>
* Bump version 2.8 * Move MFCK notebook with MFK ones under MultiFi folder * Add contributor * Mention kriging output limitation in the doc
* Initial fix to comparison (Fixes #682 ) * Changed test cases reliant on lhs ese optimisation results * Adding to contributors
* remove small variance warning * fix commenté
Bumps [pypa/cibuildwheel](https://github.com/pypa/cibuildwheel) from 2.21.3 to 2.22.0. - [Release notes](https://github.com/pypa/cibuildwheel/releases) - [Changelog](https://github.com/pypa/cibuildwheel/blob/main/docs/changelog.md) - [Commits](pypa/cibuildwheel@v2.21.3...v2.22.0) --- updated-dependencies: - dependency-name: pypa/cibuildwheel dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Rémi Lafage <[email protected]>
… outputs (#686) * Add a warnings when multiple outputs are used to train a kriging based surrogate * Test warning presence * Adjust message
* new save and load functions for the surrogate models * new save functions for the surrogates and identification of the necessary attributes for predict_values() * final implementation of an save/load option for the surrogates with pickle * better test's assertions * ruff check modifications * changes to validate the pull request
Co-authored-by: Enrico Stragiotti <[email protected]>
* Add the option to specify a seed for the Random sampling method * Behaviour is controlled by the numpy version used * Create unit tests * Update doc with new option and add seed to test function to avoid to generete different image every time the doc is compiled * Change authors order --------- Co-authored-by: Enrico Stragiotti <[email protected]>
…#698) * Add error calculation functions and tests * rename of compute_rms_error() to compute_relative_error() * changes for the validation of the pull request * format tutorial with ruff * rename functions
…riterion (#699) * update notebook for sbo thanks to heine rostum
* Add adaptative doe notebooks * Fix compute_relative_error and ruff -- Co-authored-by: Maxime Lalande <[email protected]>
* Adding anisotropic Kernel computation and regularization option in the likelihood * Fixing test * Updates with the removal of blank lines, checked with ruff, test added * Save changes to SMT_MFCK_tutorial.ipynb * Organizing to merge branchs * Formating files with ruff * Formating files with ruff. * Update Cobyla parameters * Clean up
* Add save/load API documentation * Fix titles underlining and typos * Add contrived load method for API documentation * Fix reference * Fix design_space path, not in utils anymore * Add smt-design-space-ext as required doc dependencies * Fix typo * Update .rst due to is_ri option and design_space move
* Bump version 2.9 * Bump egobox optional dependency * Remove trailing space
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