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Commits on Nov 9, 2022

• Rework / add new faidx tests

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  daviesrob

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  whitwham

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  8e43fb0

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Commits on Jul 7, 2022

• Make hfile_s3 refresh AWS credentials on expiry

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  daviesrob

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  whitwham

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  b014804

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Commits on Jun 21, 2022

• Fix breakend detection and test bcf_set_variant_type (PR samtools#1456)

  mp15

  authored
  226c1a8

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Commits on Aug 10, 2021

• Minor tidy ups for methylation test programs

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  jmarshall

  committed
  d67da0e

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Commits on Feb 4, 2021

• Move non-plugin introspection API to htslib/hts.h, hts.c

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  jmarshall

  authored and

  jkbonfield

  committed
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Commits on Jan 11, 2021

• Use htscodecs as a submodule.

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  jkbonfield

  and

  daviesrob

  committed
  f5203fc

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Commits on Jan 4, 2021

• Don't set $host_alias as that confuses autoconf 2.70

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  jmarshall

  authored and

  jkbonfield

  committed
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Commits on Sep 15, 2020

• Handle q==0.0 case in kt_fisher_exact() and add tests

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  jmarshall

  and

  daviesrob

  committed
  1700476

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Commits on Jul 7, 2020

• Link libhts.so into plugins on Unix&macOS; add hts_lib_shutdown()

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  jmarshall

  authored and

  daviesrob

  committed
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Commits on Nov 22, 2019

• Add missing Makefile dependencies and ignored test executable

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  jmarshall

  committed
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Commits on Nov 13, 2019

• Fix htslib.mk parallel build (PR samtools#969)

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  daviesrob

  authored and

  whitwham

  committed
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Commits on Nov 5, 2019

• Hide unwanted symbols in Windows dll and add exports check

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  daviesrob

  committed
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Commits on Nov 4, 2019

• Add test-shlib-exports Makefile target

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  daviesrob

  committed
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Commits on Sep 26, 2019

• Add large position tests

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  daviesrob

  committed
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Commits on Jul 7, 2019

• Fix test/test_realn.o dependency; ignore test/test-parse-reg [minor]

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  jmarshall

  committed
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Commits on Mar 12, 2019

• Ignore test/test_index executable [trivial]

  jmarshall

  committed
  0cd3575

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Commits on Oct 30, 2018

• Add bam_plp_insertion() function

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  jkbonfield

  authored and

  daviesrob

  committed
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Commits on Sep 10, 2018

• Add test/test_kstring

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  daviesrob

  committed
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Commits on Jul 27, 2018

• Fix possible thread pool lock-up

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  daviesrob

  committed
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Commits on Feb 9, 2018

• Add sam_prob_realn tests

  daviesrob

  committed
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Commits on Nov 7, 2017

• Add test-bcf-translate to .gitignore [minor]

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  jmarshall

  committed
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Commits on Jul 4, 2017

• Adaptations to Windows line endings and binary/text files:

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  anderskaplan

  authored and

  jkbonfield

  committed
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Commits on Mar 24, 2017

• add test-bcf-sr to .gitignore [minor]

  

  mcshane

  authored and

  jkbonfield

  committed
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Commits on Mar 6, 2017

• Merged PR#463 (Configure BZ2/LZMA and make htslib.pc more accurate).

  jkbonfield

  committed
  a2d7f07

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Commits on Mar 1, 2017

• Create a Makefile fragment with static linking flags

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  daviesrob

  committed
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Commits on Feb 14, 2017

• Add tabix functional tests

  daviesrob

  committed
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Commits on Feb 8, 2017

• Add bgzf unit tests

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  daviesrob

  authored and

  jkbonfield

  committed
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Commits on Feb 7, 2017

• Merge "Further thread pool fixes" branch (PR samtools#465)

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  daviesrob

  committed
  190a722

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Commits on Jan 25, 2017

• Add hts_endian.h to convert little-endian bytes to/from native integers.

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  daviesrob

  committed
  86e32e9

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Commits on Jan 24, 2017

• Add BZ2/LZMA to configure.ac and infrastructure to config.pc.in

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  jmarshall

  committed
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Commits on Jul 5, 2016

• Generate config.h.in with autoheader

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  jmarshall

  committed
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Commits on Jun 14, 2016

• Build DLL and plugins on Cygwin

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  jmarshall

  committed
  2cddfb3

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Commits on Jan 20, 2016

• Ignore .exe and .dSYM extensions

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  jmarshall

  committed
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Commits on Oct 28, 2015

• Add hFILE plugin interface and pluginise irods/libcurl backends

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  jmarshall

  committed
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Commits on Mar 31, 2015

• Set configure #defines via config.h

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  jmarshall

  committed
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