Lab Handbook For BHKLab

Transparent and reproducible medical image processing pipelines in Python.

A simple ConvNext model for 2D or 3D image classification using NIfTI files

Clinical Histopathology Imaging Evaluation Foundation Model

Code release for ConvNeXt V2 model

[MICCAI 2023] MedNeXt is a fully ConvNeXt architecture for 3D medical image segmentation.

Official repository of the 2020 UHN RADCURE challenge.

Hydra is a framework for elegantly configuring complex applications

The code base for Generalizable Dose Prediction for Heterogenous Multi-Cohort and Multi-Site Radiotherapy Planning (GDP-HMM) challenge at AAPM 2025

Awesome Lists for Tenure-Track Assistant Professors and PhD students. (助理教授/博士生生存指南)

Multimodal Whole Slide Foundation Model for Pathology

The webpage of the MIMIST-ccRCC project.

Deep survival analysis made easy

FeAture Explorer

Keras/Tensorflow implementation of TP-GAN (end-to-end automatic approach for treatment planning in low-dose-rate prostate brachytherapy)

Keras/Tensorflow implementation of 3D pix2pix for automating seed planning for prostate brachytherapy

Modeling Dense Multimodal Interactions Between Biological Pathways and Histology for Survival Prediction - CVPR 2024

List of AI Residency Programs

A list of open-source software tailored for the Medical Physics domain

Towards a general-purpose foundation model for computational pathology - Nature Medicine

A vision-language foundation model for computational pathology - Nature Medicine

Open source tools for computational pathology - Nature BME

A basic implementation of Layer-wise Relevance Propagation (LRP) in PyTorch.

A PyTorch 1.6 implementation of Layer-Wise Relevance Propagation (LRP).

A game theoretic approach to explain the output of any machine learning model.

Deep Learning for Recurrence Score

2024 up-to-date list of DATASETS, CODEBASES and PAPERS on Multi-Task Learning (MTL), from Machine Learning perspective.