Starred repositories
Source code for RNAseq analysis on iPSC-derived neurons from Parkinson Disease patients.
Scripts for paper entitled "Limits in the detection of m6A changes using MeRIP/m6A-seq
LocusCompareR is a R package with visualization tools for comparing two genetic association datasets.
Multiscale embedded gene co-expression network analysis
Scripts for plotting figures and running analysis throughout the manuscript
Pathway Enrichment-Guided Activity Study of Alternative Splicing (PEGASAS)
Pipeline definitions used to construct AMP-PD data products
Identify RNA editing sites from mapped bam files
REDItools are python scripts to investigate RNA editing at genomic scale.
RNA editing quantification in deep transcriptome data
Single cell current best practices tutorial case study for the paper:Luecken and Theis, "Current best practices in single-cell RNA-seq analysis: a tutorial"
a suite of tools for the reliable identification of genomic variants from RNA-Seq data
Official code repository for GATK versions 4 and up
Materials and IPython notebooks for "Python for Data Analysis" by Wes McKinney, published by O'Reilly Media
深度学习入门开源书,基于TensorFlow 2.0案例实战。Open source Deep Learning book, based on TensorFlow 2.0 framework.
Exercises answers to the book "machine-learning" written by Prof. Zhou Zhihua of Nanjing University
Mixed-effects models in R using S4 classes and methods with RcppEigen
A collection of various deep learning architectures, models, and tips
Mastering Machine Learning with R, Second Edition by Packt