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Source code for RNAseq analysis on iPSC-derived neurons from Parkinson Disease patients.

R 4 Updated Oct 19, 2022

Scripts for paper entitled "Limits in the detection of m6A changes using MeRIP/m6A-seq

R 49 33 Updated Jan 9, 2020

R script for the covid balf data analysis

R 65 35 Updated Aug 12, 2020

LocusCompareR is a R package with visualization tools for comparing two genetic association datasets.

R 109 18 Updated Nov 24, 2022

Multiscale embedded gene co-expression network analysis

HTML 49 16 Updated Jan 9, 2024

Scripts for plotting figures and running analysis throughout the manuscript

R 11 4 Updated Nov 2, 2021

Pathway Enrichment-Guided Activity Study of Alternative Splicing (PEGASAS)

Python 18 11 Updated Jun 16, 2022

Pipeline definitions used to construct AMP-PD data products

WDL 6 6 Updated Oct 21, 2020

Identify RNA editing sites from mapped bam files

Perl 8 6 Updated Mar 6, 2019

REDItools are python scripts to investigate RNA editing at genomic scale.

Python 62 34 Updated Oct 23, 2024

RNA editing quantification in deep transcriptome data

Python 15 9 Updated Nov 16, 2022

A comprehensive tutorial about GWAS and PRS

867 333 Updated Apr 1, 2023

二代测序数据分析

354 164 Updated Dec 6, 2023

MetaXcan software and manuscript

Python 153 92 Updated Nov 12, 2024

Single cell current best practices tutorial case study for the paper:Luecken and Theis, "Current best practices in single-cell RNA-seq analysis: a tutorial"

Jupyter Notebook 1,434 469 Updated Dec 11, 2022

学习笔记:我的第一个github仓库

53 26 Updated Jan 13, 2021

a suite of tools for the reliable identification of genomic variants from RNA-Seq data

Perl 7 5 Updated Nov 8, 2017

Official code repository for GATK versions 4 and up

Java 1,753 597 Updated Jan 24, 2025
R 32 13 Updated Jun 15, 2023

Materials and IPython notebooks for "Python for Data Analysis" by Wes McKinney, published by O'Reilly Media

Jupyter Notebook 22,595 15,302 Updated Dec 22, 2023

深度学习入门开源书,基于TensorFlow 2.0案例实战。Open source Deep Learning book, based on TensorFlow 2.0 framework.

Jupyter Notebook 13,206 4,081 Updated Aug 30, 2021

《机器学习》(西瓜书)公式详解

24,325 4,762 Updated Nov 8, 2024

Exercises answers to the book "machine-learning" written by Prof. Zhou Zhihua of Nanjing University

HTML 536 429 Updated Mar 20, 2019

Mixed-effects models in R using S4 classes and methods with RcppEigen

HTML 639 149 Updated Jan 13, 2025
R 803 529 Updated Oct 18, 2022

A collection of various deep learning architectures, models, and tips

Jupyter Notebook 16,858 4,024 Updated Feb 8, 2024

LD Score Regression (LDSC)

Python 667 347 Updated Aug 16, 2024

Mastering Machine Learning with R, Second Edition by Packt

R 36 34 Updated Jan 30, 2023
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