DESCRIPTION

Package: DESeq2
Type: Package
Title: Differential gene expression analysis based on the negative
    binomial distribution
Version: 1.19.20
Author: Michael Love, Simon Anders, Wolfgang Huber
Maintainer: Michael Love <michaelisaiahlove@gmail.com>
Description: Estimate variance-mean dependence in count data from
    high-throughput sequencing assays and test for differential
    expression based on a model using the negative binomial
    distribution.
License: LGPL (>= 3)
VignetteBuilder:
    knitr,
    rmarkdown
Imports:
    BiocGenerics (>= 0.7.5),
    Biobase,
    BiocParallel,
    genefilter,
    methods,
    locfit,
    geneplotter,
    ggplot2,
    Hmisc,
    Rcpp (>= 0.11.0)
Depends:
    S4Vectors (>= 0.9.25),
    IRanges,
    GenomicRanges,
    SummarizedExperiment (>= 1.1.6)
Suggests:
    testthat,
    knitr,
    rmarkdown,
    vsn,
    pheatmap,
    RColorBrewer,
    IHW,
    apeglm,
    ashr,
    tximport,
    tximportData,
    readr,
    pbapply,
    airway,
    pasilla (>= 0.2.10)
LinkingTo: Rcpp, RcppArmadillo
URL: https://github.com/mikelove/DESeq2
biocViews: Sequencing, ChIPSeq, RNASeq, SAGE, DifferentialExpression,
    GeneExpression, Transcription
RoxygenNote: 6.0.1