A pairwise sequence aligner written in Rust

A bit-packed k-mer representation (and relevant utilities) for rust

Dashing 2 is a fast toolkit for k-mer and minimizer encoding, sketching, comparison, and indexing.

VDJ Clonotyping & Analysis Tools

A fast K-mer counter for high-fidelity shotgun datasets

Rust LZ4 bindings

A very simple model of COVID disease activity

A PyTorch Basecaller for Oxford Nanopore Reads

HDF5 for Rust

A tool for Racon polishing of miniasm assemblies

Rust utility code

Graph based multi genome aligner

Zstandard - Fast real-time compression algorithm

✏️ Genome assembly polishing & SNV detection

A library of common biomedical types.

Efficient pythonic random access to fasta subsequences

Reference-based variant calling pipeline for a pair of phased haplotype assemblies

RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag

Demultiplexing pooled scRNA-seq data with or without genotype reference

Large genome reassembly based on Hi-C data, continuation of GRAAL

Fast and scalable minimal perfect hashing for massive key sets

R toolkit for single cell genomics

Docopt for Rust (command line argument parser).

SPAdes Genome Assembler

Fast and memory-efficient sequencing error corrector

Fast FASTX parsing and k-mer methods in Rust

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