GitHub Pages for ImageJ

Holds the html pages for the KPMP project

Code for a multimodal atlas of healthy and injured cell states and niches in the human kidney

a generalist algorithm for cellular segmentation

3D TISSUE CYTOMETRY PLUGIN FOR IMAGEJ DOWNLOAD and INSTALL:

This is a template for Scijava based plugin extension of volumetric tissue exploration and analysis

Java implementation of the Louvain method of community detection in graphs

Wrapper to expose Renjin in the SciJava scripting framework

A deep learning tool for in situ cell classification of human kidney cells

Plugins for bone image analysis

Cross-BEAST

Code for simulating a multi-view acquisition including attenuation, convolution, reduced sampling and poission noise

The Micro-Manager plugin to acquire images with an OpenSPIM setup