Update ref to HiCanu, add link to CA.

wolongac · Sep 25, 2020 · 9e7241a · 9e7241a
1 parent d008e10
commit 9e7241a
Showing 1 changed file with 12 additions and 4 deletions.
diff --git a/documentation/source/index.rst b/documentation/source/index.rst
@@ -42,16 +42,24 @@ Canu
    history
 
 
-`Canu <http://github.com/marbl/canu>`_ is a fork of the Celera Assembler designed for high-noise single-molecule sequencing (such as
+`Canu <http://github.com/marbl/canu>`_ is a fork of the `Celera Assembler <http://wgs-assembler.sourceforge.net>`_
+designed for high-noise single-molecule sequencing (such as
 the PacBio RSII or Oxford Nanopore MinION).
 
 Publications
 ===========
-Koren S, Walenz BP, Berlin K, Miller JR, Phillippy AM. `Canu: scalable and accurate long-read assembly via adaptive k-mer weighting and repeat separation <http://doi.org/10.1101/gr.215087.116>`_. Genome Research. (2017).
 
-Koren S, Rhie A, Walenz BP, Dilthey AT, Bickhart DM, Kingan SB, Hiendleder S, Williams JL, Smith TPL, Phillippy AM. `De novo assembly of haplotype-resolved genomes with trio binning <http://doi.org/10.1038/nbt.4277>`_.  Nature Biotechnology.  (2018). (If you use trio-binning)
+Canu
+  Koren S, Walenz BP, Berlin K, Miller JR, Phillippy AM.
+  `Canu: scalable and accurate long-read assembly via adaptive k-mer weighting and repeat separation <http://doi.org/10.1101/gr.215087.116>`_. Genome Research. (2017).
+
+TrioCanu
+  Koren S, Rhie A, Walenz BP, Dilthey AT, Bickhart DM, Kingan SB, Hiendleder S, Williams JL, Smith TPL, Phillippy AM.
+  `De novo assembly of haplotype-resolved genomes with trio binning <http://doi.org/10.1038/nbt.4277>`_. Nature Biotechnology. (2018).
 
-Nurk S, Walenz BP, Rhiea A, Vollger MR, Logsdon GA, Grothe R, Miga KH, Eichler EE, Phillippy AM, Koren S. `HiCanu: accurate assembly of segmental duplications, satellites, and allelic variants from high-fidelity long reads <https://doi.org/10.1101/2020.03.14.992248>`_.  biorXiv.  (2020). (If you use -pacbio-hifi)
+HiCanu
+  Nurk S, Walenz BP, Rhiea A, Vollger MR, Logsdon GA, Grothe R, Miga KH, Eichler EE, Phillippy AM, Koren S.
+  `HiCanu: accurate assembly of segmental duplications, satellites, and allelic variants from high-fidelity long reads <https://doi.org/10.1101/gr.263566.120>`_. Genome Research. (2020).
 
 Install
 =========