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The repository provides code for running inference with the Meta Segment Anything Model 2 (SAM 2), links for downloading the trained model checkpoints, and example notebooks that show how to use th…

Jupyter Notebook 13,791 1,376 Updated Dec 25, 2024

Machine learning research work conducted in Stanford's Tang Lab.

Python 1 Updated Jul 23, 2024

Interactive microfluidic design editor

JavaScript 77 70 Updated Sep 24, 2024

Track cells and build cell lineages

Python 31 6 Updated Aug 6, 2024
Python 58 12 Updated Jan 8, 2025

The repository provides code for running inference with the SegmentAnything Model (SAM), links for downloading the trained model checkpoints, and example notebooks that show how to use the model.

Jupyter Notebook 48,644 5,745 Updated Sep 18, 2024

CellViT: Vision Transformers for Precise Cell Segmentation and Classification

Python 263 47 Updated Jan 10, 2025

MoTT is the official repository of the paper "A Motion Transformer for Single Particle Tracking in Fluorescence Microscopy Images".

Python 12 Updated Jul 19, 2024

[T-PAMI-2024] Transformer-Based Visual Segmentation: A Survey

718 49 Updated Aug 25, 2024
Jupyter Notebook 113 18 Updated Jul 3, 2024

MPM: Joint Representation of Motion and Position Map for Cell Tracking

Jupyter Notebook 1 Updated Dec 25, 2022

The Self-Assembling-Manifold (SAM) algorithm.

Python 41 11 Updated Jul 18, 2024

Learn morphological states of dynamic cells

Jupyter Notebook 12 1 Updated Apr 16, 2023

R toolkit for single cell genomics

R 2,350 926 Updated Jan 24, 2025

SAMap: Mapping single-cell RNA sequencing datasets from evolutionarily distant organisms.

Jupyter Notebook 69 20 Updated Apr 23, 2024

UCE is a zero-shot foundation model for single-cell gene expression data

Python 180 30 Updated Nov 19, 2024

Multi-task UNet for medical image classification and saliency prediction

Python 11 1 Updated Jan 29, 2022

BioCPPNet: Automatic Bioacoustic Source Separation with Deep Neural Networks

Jupyter Notebook 64 15 Updated Aug 20, 2024

A PyTorch implementation of Time-domain Audio Separation Network (TasNet) with Permutation Invariant Training (PIT) for speech separation.

Python 112 31 Updated Jan 27, 2019

[ECCV 2022] Official PyTorch implementation of the paper - Graph Neural Network for Cell Tracking in Microscopy Videos

Python 65 10 Updated Nov 30, 2022

SkelGAN: A Font Image Skeletonization Method

Python 7 2 Updated Mar 22, 2022
Python 19 5 Updated Aug 15, 2021

A faster implementation of PointNet++ based on PyTorch.

Python 485 107 Updated Mar 5, 2023

My latex templates for Graduate School SOP.

TeX 46 14 Updated Dec 25, 2018

PointNet and PointNet++ implemented by pytorch (pure python) and on ModelNet, ShapeNet and S3DIS.

Python 3,873 918 Updated Apr 24, 2024

This is a point cloud denoiser using Weighted Locally Optimal Projection

MATLAB 22 4 Updated Feb 1, 2021

An easy-to-use Python library for processing and manipulating 3D point clouds and meshes.

C++ 1,376 107 Updated Sep 8, 2024

Fast computation of Hausdorff distance in Python

Python 252 34 Updated May 28, 2021

Point2Skeleton: Learning Skeletal Representations from Point Clouds (CVPR2021)

Python 214 38 Updated Aug 22, 2023

Convex hull of given 3D points

Python 92 20 Updated Jun 4, 2021