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@wtsi-npg

Wellcome Sanger Institute - NPG

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  1. illumina2bam illumina2bam Public

    Generate and process BAM files from Illumina sequencing instrument files

    Java 23 15

  2. baton baton Public

    iRODS client programs and API

    C 19 19

  3. npg_seq_pipeline npg_seq_pipeline Public

    Processing and analysis of data coming from Illumina sequencing machines

    Perl 10 17

  4. bambi bambi Public

    Process Illumina instrument data into SAM/BAM/CRAM files.

    C 9 14

  5. Percolate Percolate Public archive

    A parallel workflow management application.

    Ruby 6 3

  6. genotyping genotyping Public

    Components of the WTSI genotype analysis pipeline.

    Perl 5 6

Repositories

Showing 10 of 84 repositories
  • partisan Public

    A Python client API for iRODS

    wtsi-npg/partisan’s past year of commit activity
    Python 1 GPL-3.0 4 0 0 Updated Apr 4, 2025
  • genotyping Public

    Components of the WTSI genotype analysis pipeline.

    wtsi-npg/genotyping’s past year of commit activity
    Perl 5 6 11 0 Updated Apr 4, 2025
  • perl-irods-wrap Public

    Perl iRODS Client Wrapper Library

    wtsi-npg/perl-irods-wrap’s past year of commit activity
    Perl 4 20 12 0 Updated Apr 4, 2025
  • containers Public

    Singularity and Docker material

    wtsi-npg/containers’s past year of commit activity
    Shell 1 6 7 0 Updated Apr 4, 2025
  • npg-irods-python Public

    Applications for the management of data and metadata in iRODS

    wtsi-npg/npg-irods-python’s past year of commit activity
    Python 1 GPL-3.0 8 1 2 Updated Apr 4, 2025
  • logshim-zerolog Public

    logshim-zerolog is a backend using Zerolog for https://github.com/wtsi-npg/logshim

    wtsi-npg/logshim-zerolog’s past year of commit activity
    Go 0 GPL-3.0 1 0 0 Updated Apr 4, 2025
  • valet Public

    Automated data mangement for Oxford Nanopore DNA sequencing instruments

    wtsi-npg/valet’s past year of commit activity
    Go 2 GPL-3.0 4 4 0 Updated Apr 4, 2025
  • extendo Public

    An extension to baton providing a Go API for iRODS (Integrated Rule-Oriented Data System)

    wtsi-npg/extendo’s past year of commit activity
    Go 0 GPL-3.0 3 0 1 Updated Apr 4, 2025
  • sqyrrl Public

    Sqyrrl - an HTTP server for files hosted in iRODS

    wtsi-npg/sqyrrl’s past year of commit activity
    Go 1 GPL-3.0 3 2 0 Updated Apr 4, 2025
  • npg_notifications Public
    wtsi-npg/npg_notifications’s past year of commit activity
    Python 0 4 2 5 Updated Apr 3, 2025
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