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Xbiome

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  1. protein-annotation protein-annotation Public

    Python 39

  2. StrainPanDA StrainPanDA Public

    A method for reconstruction of subspecies composition and functional profiles from metagenomic data

    C 13 5

  3. BBSniffer BBSniffer Public

    Python 2 1

  4. tax-credit tax-credit Public

    Forked from caporaso-lab/tax-credit

    A repository for storing code and data related to a systematic comparison of short read taxonomy assignment tools

    Jupyter Notebook

  5. dada2 dada2 Public

    Forked from benjjneb/dada2

    Accurate sample inference from amplicon data with single nucleotide resolution

    R

  6. public-microbiome public-microbiome Public

    1

Repositories

Showing 10 of 10 repositories
  • protein-annotation Public
    xbiome/protein-annotation’s past year of commit activity
    Python 39 0 0 0 Updated Oct 16, 2024
  • StrainPanDA Public

    A method for reconstruction of subspecies composition and functional profiles from metagenomic data

    xbiome/StrainPanDA’s past year of commit activity
    C 13 GPL-2.0 5 5 0 Updated May 27, 2024
  • BBSniffer Public
    xbiome/BBSniffer’s past year of commit activity
    Python 2 GPL-3.0 1 0 0 Updated Nov 28, 2023
  • StrainPanDA-data Public
    xbiome/StrainPanDA-data’s past year of commit activity
    HTML 0 GPL-2.0 0 0 0 Updated Jun 20, 2022
  • rexmap Public

    Reference-based Exact Mapping Amplicon Pipeline

    xbiome/rexmap’s past year of commit activity
    Jupyter Notebook 0 1 0 0 Updated Jun 10, 2021
  • Autotuner Public Forked from KujawinskiLaboratory/Autotuner

    This repo contains the code needed to run the R package Autotuner. Autotuner is used to identify proper parameters during metabolomics data processing.

    xbiome/Autotuner’s past year of commit activity
    R 0 MIT 9 0 0 Updated Oct 28, 2019
  • public-microbiome Public
    xbiome/public-microbiome’s past year of commit activity
    0 1 0 0 Updated Sep 24, 2019
  • dada2 Public Forked from benjjneb/dada2

    Accurate sample inference from amplicon data with single nucleotide resolution

    xbiome/dada2’s past year of commit activity
    R 0 148 0 0 Updated Sep 2, 2018
  • tax-credit Public Forked from caporaso-lab/tax-credit

    A repository for storing code and data related to a systematic comparison of short read taxonomy assignment tools

    xbiome/tax-credit’s past year of commit activity
    Jupyter Notebook 0 BSD-3-Clause 9 0 0 Updated Dec 1, 2017
  • warpgroup Public Forked from nathaniel-mahieu/warpgroup

    The warpgroup algorithm takes multiple LC/MS samples and determines: 1. Segregation of those peaks into compound groups; 2. Per-group consensus integration bounds; 3. Integration bounds for samples in which no peak was detected.

    xbiome/warpgroup’s past year of commit activity
    R 0 GPL-3.0 9 0 0 Updated Jan 25, 2017

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