Python tools for handling intervals (ranges of comparable objects).

Signac

Cell classification by learning known phenotypes

s3path is a pathlib extension for AWS S3 Service

Steps to create a small slurm cluster with GPU enabled nodes

A curated list of awesome pipeline toolkits inspired by Awesome Sysadmin

📚 Parameterize, execute, and analyze notebooks

🎓 无需编写任何代码即可轻松创建漂亮的学术网站 Easily create a beautiful academic résumé or educational website using Hugo and GitHub. No code.

Python command line tool for Multi-Trait Analysis of GWAS (MTAG)

Pixel perfect icon theme for Linux

This repository contains chromosome/contig name mappings between UCSC <-> Ensembl <-> Gencode for a variety of genomes.

Jupyter Interactive Notebook

A system-level, binary package and environment manager running on all major operating systems and platforms.

SEER, reimplemented in python 🐍🔮

Tensors and Dynamic neural networks in Python with strong GPU acceleration

🏡 Open source home automation that puts local control and privacy first.

The fundamental package for scientific computing with Python.

KeePassXC is a cross-platform community-driven port of the Windows application “Keepass Password Safe”.

Python dictionaries with advanced dot notation access

A fast and friendly PDF scraping library.

Annotation-free quantification of RNA splicing. Yang I. Li, David A. Knowles, Jack Humphrey, Alvaro N. Barbeira, Scott P. Dickinson, Hae Kyung Im, Jonathan K. Pritchard

A Python package for exploring and analysing genetic variation data

Bayesian Modeling and Probabilistic Programming in Python

scikit-learn: machine learning in Python

Table Enforcer is my attempt to apply a sort of "test driven development" workflow to data cleaning and validation. A python package to facilitate the iterative process of developing and using sche…

Population-scale genotyping using pangenome graphs

Sublime-like terminal-based text editor

Gene Set Enrichment Analysis in Python

pytest fixtures for next generation sequencing applications