Interpretation and visualization of microbiome charts

Making whole bacterial genome sequencing data analysis easy

GenoVi, an automated customizable circular genome visualizer for bacteria and archaea

🔬 ♌ Bacterial ribosomal RNA predictor

Reorients assembled microbial sequences

A complete pipeline for metagenomic analysis

snipit: summarise snps relative to your reference sequence

ASFVBiotypingTool

Phylogenetic maximum representation sampling: choosing most representative strains or taxa

RabbitTClust: enabling fast clustering analysis of millions bacteria genomes with MinHash sketches

A curated list of nextflow based pipelines

fast phage annotation program

⚡♠️ Assemble bacterial isolate genomes from Illumina paired-end reads

A toolkit for exploring prokaryotic methylation and base modifications in nanopore sequencing

In silico Penicillin Binding Protein (PBP) typer for Streptococcus pneumoniae assemblies

De novo genome assembler for long uncorrected reads

Software package for assigning SARS-CoV-2 genome sequences to global lineages.

🔎 💊 Mass screening of contigs for antimicrobial and virulence genes