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  • Shandong University
  • Jinan

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Achievement: Pull Shark

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Achievement: Pull Shark

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@RabbitBio

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  • GPU_index_test Public

    Static hashmap lookup benchmark on GPU

    C++ 1 Updated Jan 16, 2025

  • SegTreeMallocFree Public

    A malloc/free wrapper for sunway platform

    C Updated Nov 29, 2024

  • bioconda-recipes Public

    Forked from bioconda/bioconda-recipes

    Conda recipes for the bioconda channel.

    Shell MIT License Updated Nov 3, 2024

  • PAC2024 Public

    C 1 Updated Sep 28, 2024

  • libdeflate_slave Public

    libdeflate block parallel (de)compress on sunway

    C Updated Apr 9, 2024

  • strobealign-fast Public

    Forked from ksahlin/strobealign

    Optimized version of strobealign.

    C++ 1 MIT License Updated Mar 23, 2024

  • bwa-SW9A Public

    Forked from lh3/bwa

    Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)

    C 1 GNU General Public License v3.0 Updated Mar 4, 2024

  • someTest Public

    some test

    HTML Updated Jan 8, 2024

  • strobealign-0.12.0-timer-check Public

    strobealign-0.12.0, add timer and check version

    C++ Updated Dec 23, 2023

  • htslib-pipe-opt Public

    Forked from samtools/htslib

    C library for high-throughput sequencing data formats

    C Other Updated Oct 11, 2023

  • RabbitVar-pipe-opt Public

    Forked from LeiHaoa/RabbitVar

    An Fast variant calling tool to detection germline and somatic variants

    Jupyter Notebook Other Updated Aug 4, 2023

  • samtools-pipe-opt Public

    Forked from samtools/samtools

    Tools (written in C using htslib) for manipulating next-generation sequencing data

    C Other Updated Jul 24, 2023

  • CARE Public

    Forked from fkallen/CARE

    CARE: Context-Aware Read Error correction for Illumina reads

    C++ GNU General Public License v3.0 Updated Feb 25, 2023

  • PAC2022-thundersvm Public

    Highly optimized version of thundersvm using intel oneapi tools

    C++ Updated Dec 5, 2022

  • HWcode2022 Public

    C++ Updated Apr 10, 2022

  • DailyExercise Public

    Daily exercise for some problems from CSP or codeforeces

    C++ Updated Apr 3, 2022

  • RabbitQCSTD Public

    A debug version of RabbitQC

    C++ Updated Mar 11, 2022

  • ReRabbitQC Public

    ReRabbitQC

    C++ Updated Dec 10, 2021

  • AlignmentOnGPU Public

    A GPU implement of string alignment algorithms.

    C Updated Dec 7, 2021

  • PAC2021final Public

    PAC2021final--SDUChiFanBuZhangRou

    C MIT License Updated Nov 11, 2021

  • IPCCfinal Public

    IPCC2021-final

    C++ Updated Oct 26, 2021

  • IPCC2021 Public

    C++ Updated Aug 27, 2021

  • PAC2021 Public

    PAC2021

    C++ 1 Updated Aug 21, 2021

  • RabbitQCPlus Public

    C++ GNU General Public License v3.0 Updated Aug 10, 2021

  • sleef Public

    Forked from shibatch/sleef

    SIMD Library for Evaluating Elementary Functions, vectorized libm and DFT

    C Boost Software License 1.0 Updated Jul 9, 2021

  • ASC21Finals-PRESTO Public

    C 1 GNU General Public License v2.0 Updated May 9, 2021

  • Rabbitbam2fq Public

    Rabbitbam2fq

    C Updated Mar 24, 2021

  • ASC21-PRESTO Public

    ASC20-21

    C GNU General Public License v2.0 Updated Mar 4, 2021