The modern C++ library for sequence analysis. Contains version 3 of the library and API docs.

The second version of the Kraken taxonomic sequence classification system

Statistical data visualization using matplotlib

🐙 Metagenomics classifier with unique k-mer counting for more specific results

Fast taxonomic classification of metagenomic sequencing reads using a protein reference database

DNAnexus platform client libraries

Viral genomics analysis pipelines

Utilities for building and managing bioconda recipes

Kraken taxonomic sequence classification system

Pysam is a Python module for reading and manipulating SAM/BAM/VCF/BCF files. It's a lightweight wrapper of the htslib C-API, the same one that powers samtools, bcftools, and tabix.

Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species in DNA sequences from a metagenomics sample.

GEMTools main repository

Scripts to download genomes from the NCBI FTP servers

Automatically exported from code.google.com/p/cdhit

Conda recipes for the bioconda channel.

Accelerated BLAST compatible local sequence aligner.

A Better Sequencing Simulator for Metagenomics

Scalable Nucleotide Alignment Program -- a fast and accurate read aligner for high-throughput sequencing data

Reduced Alphabet based Protein similarity Search

SURPI

A place to submit conda recipes before they become fully fledged conda-forge feedstocks

Deployment files related to https://github.com/broadinstitute/viral-ngs

Machine Learning-Based Predictive Modelling of CRISPR/Cas9 guide efficiency