update documentation

Doxyfile.in

@@ -47,7 +47,7 @@ OUTPUT_DIRECTORY       = .
 # source files, where putting all generated files in the same directory would 
 # otherwise cause performance problems for the file system.
 
-CREATE_SUBDIRS         = NO
+CREATE_SUBDIRS         = YES
 
 # The OUTPUT_LANGUAGE tag is used to specify the language in which all 
 # documentation generated by doxygen is written. Doxygen will use this 
@@ -196,7 +196,7 @@ ALIASES                =
 # For instance, some of the names that are used will be different. The list 
 # of all members will be omitted, etc.
 
-OPTIMIZE_OUTPUT_FOR_C  = NO
+OPTIMIZE_OUTPUT_FOR_C  = YES
 
 # Set the OPTIMIZE_OUTPUT_JAVA tag to YES if your project consists of Java 
 # sources only. Doxygen will then generate output that is more tailored for 
@@ -297,7 +297,7 @@ TYPEDEF_HIDES_STRUCT   = NO
 # 2^(16+SYMBOL_CACHE_SIZE). The valid range is 0..9, the default is 0, 
 # corresponding to a cache size of 2^16 = 65536 symbols
 
-SYMBOL_CACHE_SIZE      = 0
+SYMBOL_CACHE_SIZE      = 2
 
 #---------------------------------------------------------------------------
 # Build related configuration options
@@ -650,7 +650,7 @@ RECURSIVE              = YES
 # excluded from the INPUT source files. This way you can easily exclude a 
 # subdirectory from a directory tree whose root is specified with the INPUT tag.
 
-EXCLUDE                = 
+EXCLUDE                = ../build
 
 # The EXCLUDE_SYMLINKS tag can be used select whether or not files or 
 # directories that are symbolic links (a Unix filesystem feature) are excluded 
@@ -678,7 +678,7 @@ EXCLUDE_SYMBOLS        =
 # directories that contain example code fragments that are included (see 
 # the \include command).
 
-EXAMPLE_PATH           = ../applications
+EXAMPLE_PATH           = ../examples
 
 # If the value of the EXAMPLE_PATH tag contains directories, you can use the 
 # EXAMPLE_PATTERNS tag to specify one or more wildcard pattern (like *.cpp 
@@ -734,7 +734,7 @@ FILTER_SOURCE_FILES    = NO
 # Note: To get rid of all source code in the generated output, make sure also 
 # VERBATIM_HEADERS is set to NO.
 
-SOURCE_BROWSER         = NO
+SOURCE_BROWSER         = YES
 
 # Setting the INLINE_SOURCES tag to YES will include the body 
 # of functions and classes directly in the documentation.
@@ -788,7 +788,7 @@ VERBATIM_HEADERS       = YES
 # of all compounds will be generated. Enable this if the project 
 # contains a lot of classes, structs, unions or interfaces.
 
-ALPHABETICAL_INDEX     = NO
+ALPHABETICAL_INDEX     = YES
 
 # If the alphabetical index is enabled (see ALPHABETICAL_INDEX) then 
 # the COLS_IN_ALPHA_INDEX tag can be used to specify the number of columns 
@@ -863,7 +863,7 @@ HTML_ALIGN_MEMBERS     = YES
 # JavaScript and DHTML is required (for instance Mozilla 1.0+, Firefox 
 # Netscape 6.0+, Internet explorer 5.0+, Konqueror, or Safari).
 
-HTML_DYNAMIC_SECTIONS  = NO
+HTML_DYNAMIC_SECTIONS  = YES
 
 # If the GENERATE_DOCSET tag is set to YES, additional index files 
 # will be generated that can be used as input for Apple's Xcode 3 
@@ -1476,7 +1476,7 @@ CLASS_GRAPH            = YES
 # indirect implementation dependencies (inheritance, containment, and 
 # class references variables) of the class with other documented classes.
 
-COLLABORATION_GRAPH    = YES
+COLLABORATION_GRAPH    = NO
 
 # If the GROUP_GRAPHS and HAVE_DOT tags are set to YES then doxygen 
 # will generate a graph for groups, showing the direct groups dependencies
@@ -1487,12 +1487,12 @@ GROUP_GRAPHS           = YES
 # collaboration diagrams in a style similar to the OMG's Unified Modeling 
 # Language.
 
-UML_LOOK               = NO
+UML_LOOK               = YES
 
 # If set to YES, the inheritance and collaboration graphs will show the 
 # relations between templates and their instances.
 
-TEMPLATE_RELATIONS     = NO
+TEMPLATE_RELATIONS     = YES
 
 # If the ENABLE_PREPROCESSING, SEARCH_INCLUDES, INCLUDE_GRAPH, and HAVE_DOT 
 # tags are set to YES then doxygen will generate a graph for each documented 
@@ -1514,15 +1514,15 @@ INCLUDED_BY_GRAPH      = YES
 # the time of a run. So in most cases it will be better to enable call graphs 
 # for selected functions only using the \callgraph command.
 
-CALL_GRAPH             = NO
+CALL_GRAPH             = YES
 
 # If the CALLER_GRAPH and HAVE_DOT tags are set to YES then 
 # doxygen will generate a caller dependency graph for every global function 
 # or class method. Note that enabling this option will significantly increase 
 # the time of a run. So in most cases it will be better to enable caller 
 # graphs for selected functions only using the \callergraph command.
 
-CALLER_GRAPH           = NO
+CALLER_GRAPH           = YES
 
 # If the GRAPHICAL_HIERARCHY and HAVE_DOT tags are set to YES then doxygen 
 # will graphical hierarchy of all classes instead of a textual one.