This repository stores scripts for Hudson River Raritan and Long Island Sound oyster admixture manuscript.
Scripts processing lcWGS data are mostly modified from Therkildson Lab scripts for whole-genome sequencing data processing and analysis.
Tutorials for analysis of low-coverage whole genome sequencing data
Dr. Honggang Zhao's code repo https://github.com/hzz0024/HG_Code_Bay
ddRAD data processing: http://www.ddocent.com/UserGuide/