added GIFs to demonstrate Cell counting

zeiss-microscopy · Mar 19, 2020 · b73434e · b73434e
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diff --git a/BioApps/Count_Cells_Simple_Setup.gif b/BioApps/Count_Cells_Simple_Setup.gif
diff --git a/BioApps/README.md b/BioApps/README.md
@@ -23,3 +23,26 @@ The Image Analysis Settings (*.czias) can be used inside ZEN Blue or ZEN Core wi
 
 Since the concept of **Open Application Development** (OAD) is about connecting the ZEN world with other valuable software tools, those example will also contain non-ZEN scripts etc.
 
+## Counting Cells - the Classical Example
+
+Those two short videos demonstrate how to do a simple cell count in ZEN blue abd display a heatmap. The [1st video](Count_Cells_Simple_Setup.gif) explains how to setup the IA analysis and the [2nd video](Run_Count_Cells_96wellplate_1GB_File_RealTime.gif) shows how is runs in Real Time (on a laptop). 
+Remark: The heatmap is shown at the end of the 2nd video.
+
+![Setuo Image Analysis to Count Cells](Count_Cells_Simple_Setup.gif "Setuo Image Analysis to Count Cells")
+
+![Setuo Image Analysis to Count Cells](Run_Count_Cells_96wellplate_1GB_File_RealTime.gif "Run Counting Cell IA Setting RealTime")
+
+<p><img src="../Images/96well_heatmap.png" title="Heatmap from IA Analysis - Cell Count" width="700"></p>
+
+Image Data:
+
+* CZI file with 96 scenes from a typical wellplate sample carrier on a CellDiscoverer 7
+* file size is rather small = approx. 1GB
+
+The image analysis is quite straight forward and included the following steps:
+
+* Smoothing using Median Filter
+* Triangle Threshold
+* Filter small particles
+* Fill Holes
+* Separate by Watershed
diff --git a/BioApps/Run_Count_Cells_96wellplate_1GB_File_RealTime.gif b/BioApps/Run_Count_Cells_96wellplate_1GB_File_RealTime.gif
diff --git a/Images/96well_heatmap.png b/Images/96well_heatmap.png