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Issues list

Error: unable to find an inherited method for function ‘NSBS’ for signature ‘"SortedByQueryHits"’
#204 by aboyd003 was closed Mar 29, 2023
lfc_shrink not working in differential_expression
#201 by perinom was closed Jan 3, 2022
1
object 'min_count' not found in plot_threshold_exploration()
#194 by perinom was closed Nov 8, 2021
3
Installation fail from github
#192 by perinom was closed Oct 10, 2021
column_to_rownames not found in normalize_counts
#142 by gzentner was closed Jan 31, 2021
1
Heatmap border
#131 by gzentner was closed Jan 26, 2021
1
split heatmap by gene list enhancement New feature or request
#129 by rpolicastro was closed Jan 26, 2021
1
Dominant TSS in heatmap wontfix This will not be worked on
#124 by gzentner was closed Jan 26, 2021
2
Sample ordering bug Something isn't working enhancement New feature or request
#115 by gzentner was closed Jan 22, 2021
1
switch GenomicRanges:::get_out_of_bound_index to custom function behavior
#114 by rpolicastro was closed Jan 22, 2021
1
Add return_table argument to appropriate functions enhancement New feature or request
#111 by rpolicastro was closed Jan 22, 2021
1
combine explore_thresholds with plot_threshold_exploration behavior
#110 by rpolicastro was closed Jan 22, 2021
1
rename conditions function behavior
#109 by rpolicastro was closed Jan 22, 2021
1
Distance for merge_samples enhancement New feature or request
#106 by gzentner was closed Jan 19, 2021
1
n_samples argument for tss_clustering enhancement New feature or request
#100 by gzentner was closed Jan 18, 2021
1
plot ordering and data conditionals for TSS and TSR heatmap enhancement New feature or request
#95 by rpolicastro was closed Jan 26, 2021
1
Error in nucleotide color plot bug Something isn't working
#93 by gzentner was closed Jan 18, 2021
1
Add genomic coordinates to gene tracks enhancement New feature or request
#92 by gzentner was closed Jan 11, 2021
1
Error in plot_shift_count
#90 by gzentner was closed Jan 11, 2021
1
Access DE feature numbers enhancement New feature or request
#87 by gzentner was closed Jan 19, 2021
1
Exporting promoter regions for enrichment enhancement New feature or request
#84 by gzentner was closed Jan 11, 2021
1
TSR hashing documentation Improvements or additions to documentation wontfix This will not be worked on
#83 by gzentner was closed Jan 1, 2021
1
Error in sequence retrieval for selected samples
#82 by gzentner was closed Dec 31, 2020
1
Location of transcript annotations in gene tracks enhancement New feature or request
#78 by gzentner was closed Jan 11, 2021
1
1
DE number plots enhancement New feature or request
#77 by gzentner was closed Dec 30, 2020
1
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