zhangyixing3
Follow
-
awesome-pangenomes Public
Forked from colindaven/awesome-pangenomesA list of software for pangenomics
MIT License UpdatedJan 9, 2025 -
jcvi Public
Forked from tanghaibao/jcviPython library to facilitate genome assembly, annotation, and comparative genomics
Python BSD 2-Clause "Simplified" License UpdatedDec 21, 2024 -
-
pantools Public
A few practical commands in my pangenom project are continuously updated with ongoing efforts.
Rust MIT License UpdatedNov 21, 2024 -
strangepg Public
Forked from qwx9/strangepgstrange pangenome and large graph visualization
C MIT License UpdatedNov 19, 2024 -
-
kmersGWAS Public
Forked from voichek/kmersGWASA library for running k-mers based GWAS
C++ GNU General Public License v3.0 UpdatedOct 29, 2024 -
graph_peak_caller Public
Forked from uio-bmi/graph_peak_callerChIP-seq peak caller for reads mapped to a graph-based reference genome
Python BSD 3-Clause "New" or "Revised" License UpdatedAug 17, 2024 -
transanno Public
Forked from informationsea/transannoaccurate LiftOver tool for new genome assemblies
Rust GNU General Public License v3.0 UpdatedAug 8, 2024 -
PanSynVisualization Public
Forked from sdws1983/PanSynVisualizationPan-genome Synteny Map Visualization
Jupyter Notebook GNU Affero General Public License v3.0 UpdatedJun 27, 2024 -
rust-in-bioinformatics Public
Forked from sharkLoc/rust-in-bioinformaticsA collection of genomics software tools written in Rust
MIT License UpdatedMay 22, 2024 -
-
-
-
krust Public
Forked from suchapalaver/krustcounts k-mers, written in rust
-
Quickly save useful bash commands
Rust GNU General Public License v3.0 UpdatedMay 13, 2022 -
ALLHIC_Manually Public
Forked from Yujiaxin419/ALLHiCALLHiC: phasing and scaffolding polyploid genomes based on Hi-C data
Perl UpdatedSep 9, 2021 -
karyopype Public
Forked from jakevc/karyopypeA chromosomal visualization package for python.